Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02196 and BL02894
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_02196___hmp.1.5803.seq
# -bsequence dna-align/BL02894___hmp.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02196___hmp-BL02894___hmp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02196___hmp-BL02894___hmp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02196___hmp
# 2: BL02894___hmp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1411
# Identity: 749/1411 (53.1%)
# Similarity: 749/1411 (53.1%)
# Gaps: 407/1411 (28.8%)
# Score: 1695.5
#
#
#=======================================
BSNT_02196___ 1 ATGTTAGATAACAAAACAATCGAAATTATTAAAAGCACTGTACCCGTATT 50
|||.||..|.|.|||||.||..|||||.|.|||...||.|..||.||.||
BL02894___hmp 1 ATGCTATCTGAAAAAACCATGCAAATTGTCAAATCGACCGCCCCTGTTTT 50
BSNT_02196___ 51 GCAACAGCATGGAGAAACA---ATCACTGGCC----GTTTTTACGATCGG 93
..||.|..|.|| |||| |||| || ||||||||.|.|||
BL02894___hmp 51 AAAAGAAAAGGG---AACAGAGATCA----CCACTTGTTTTTACAAGCGG 93
BSNT_02196___ 94 ATGTTTCAAGACCATCCAGAGCTTTTG---AACATTTTTAA----TCAAA 136
||||||.|.|.|||.||.|| .||| ||||||||.|| ||
BL02894___hmp 94 ATGTTTGATGCCCACCCTGA---ATTGAAAAACATTTTCAACATGTC--- 137
BSNT_02196___ 137 CAAACCAAAAGAAAAAAAC------ACAG-CGAATTGCTCTGGCAAATGC 179
||.|.|| .|||| |||| |||| .|||.||||
BL02894___hmp 138 ----CCGACAG---CAAACCGGCGGACAGCCGAA-AGCTTTGGC------ 173
BSNT_02196___ 180 CGTTAT-------TGCAGCTGCGGC---AAACATTGACCAATTAGGAAAC 219
||.| ||||| ||||| ||||||.||||...|.|.|.||
BL02894___hmp 174 --TTTTACTGTGCTGCAG--GCGGCTGAAAACATCGACCGGCTCGAAGAC 219
BSNT_02196___ 220 ATCATTCCGGTTGTCAAACAAATCGGCCACAAGCACCGCAGTATCGGAA- 268
.|..|.|||||||||||.||.|||||.||.||.|||...|||.| |.|
BL02894___hmp 220 CTGCTGCCGGTTGTCAAGCAGATCGGACATAAACACAAAAGTTT--GCAT 267
BSNT_02196___ 269 -TTAAGCCTGAGCACTACCCAATCGTCGGTAAATA---TTTGCTGATTGC 314
|.||.||.||||||||.||.||.||||||.|..| |||| || .||
BL02894___hmp 268 GTGAAACCAGAGCACTATCCTATTGTCGGTCAGCACCTTTTG--GA-AGC 314
BSNT_02196___ 315 GATTAAAGAT-GTATTGGGAGACGCTGCAACTCCTGACATTATGCAGGCA 363
.|||.|| || ||..|.||.||.|||||.||....||||||.|.||||||
BL02894___hmp 315 AATTGAA-ATCGTGCTCGGCGAAGCTGCGACAGAGGACATTCTCCAGGCA 363
BSNT_02196___ 364 TGGGAAAAAGCGTACGGAGTCATTGCTGACGCG--TTCATCGGAATTGAA 411
||||.|.||||.||.|.||..||.|| .||.| ||.||.|.|.|.|||
BL02894___hmp 364 TGGGCAGAAGCCTATGAAGAGATCGC--CCGTGTATTTATTGAAGTCGAA 411
BSNT_02196___ 412 AAAGACATGTATGA-----ACAGGCTGAAGAGCAAGCCGGCGGCTGGAA- 455
|||.|.|||||||| ||| ||.|||| ||.|||||
BL02894___hmp 412 AAACAAATGTATGAGGAAGACA-----AAAAGCA-------GGATGGAAA 449
BSNT_02196___ 456 ---GGA---GTATAAGCCATTCGCTATCGCA---AAAAAAGAG-CGGGAA 495
||| ||.|||.||.||.|..|| || |.|||.||| || |
BL02894___hmp 450 TTGGGAAGGGTTTAAACCGTTTGTCAT--CATGGATAAACGAGTCG---A 494
BSNT_02196___ 496 AGCAAAGA-AATTACATCCTTCTATTTGAAACCAGAAGACGGCAAGCCGT 544
|.|..|.| .||.||.|||||.||||||||.||.|..||.||.|.|.|.|
BL02894___hmp 495 ATCCGATACGATAACCTCCTTTTATTTGAAGCCCGCCGATGGAACGGCTT 544
BSNT_02196___ 545 TACCTGAATTCCAAG--CAGGTCA------ATATATCAGCATCAAAGTGC 586
|.||.|..||| || |.||.|| ||.|.||.||||.|||
BL02894___hmp 545 TGCCCGCTTTC--AGCCCCGGACAGTACGTATCTGTCTGCATTAAA---- 588
BSNT_02196___ 587 GGATTCCTG---------ATTTTGAATATACGCATATC-CGCCAGTACAG 626
|||||.| |||| |.||.| .|.||||||||
BL02894___hmp 589 --ATTCCGGGCGAACCATATTT----------CTTAACAAGGCAGTACAG 626
BSNT_02196___ 627 CCTGTCTGATATGCCGGGA--AAAGACTATTATCGAATTTCAGTGAA--- 671
|.|||| |.||||..||| ||||||||.||.||.||||||||.||
BL02894___hmp 627 CTTGTC--AGATGCTTGGAATAAAGACTACTACCGCATTTCAGTCAAATT 674
BSNT_02196___ 672 ------GAAAGATGGTGTCGTGTCTTCCTACTTACACGATGGG------- 708
|.|.||.|| ||.|| ||.||||
BL02894___hmp 675 GGAAGCGGAGGAAGG-----------CCAAC-----CGGTGGGAAAGGTA 708
BSNT_02196___ 709 ---------CTGCAGGAG-----GGAGAT-----TCA--ATAGAGATCAG 737
|||||.||| |||.|| .|| .|.||..|.||
BL02894___hmp 709 TCAAGCTATCTGCATGAGAACATGGAAATCGGCGGCAGCTTGGAAGTGAG 758
BSNT_02196___ 738 CGCGCCGGCAGGGGACTTTGTTTTAGATCATGCATCACA------AAAAG 781
|||.||.||.||.||.| ||||| .||.|
BL02894___hmp 759 CGCTCCCGCCGGAGATT-----------------TCACACTTTCCGAAGG 791
BSNT_02196___ 782 ATC---TCGT--------TTTGATCAGTGCCGGAGTTGGCATTACACCAA 820
|.| |||| |||.||.||.||||||...|||||.||.||..
BL02894___hmp 792 AACGGATCGTCCGGTTTATTTCATTAGCGCCGGATCAGGCATCACGCCTG 841
BSNT_02196___ 821 TGATCAGCATGTTGAAAACATCTGTTTCCAA---ACAGCCTGAACGGC-A 866
|.||.||||||.||.||||.| ||..||.|| |.|||| .|.|| |
BL02894___hmp 842 TCATGAGCATGGTGCAAACGT-TGGCTCAAAAAGAAAGCC---GCCGCGA 887
BSNT_02196___ 867 AATTCTGTTCATTCATGCGGCGAAAAACAGTGAA---TATCATGCATTGC 913
.||....|||.|.|||||.|||||| |.|||| .||||.||.||
BL02894___hmp 888 GATCACATTCGTGCATGCCGCGAAA---ACTGAACGGCATCACGCTTT-- 932
BSNT_02196___ 914 GCCATGAGGTAGA-----AGAAGCAG--------CAA-------AACATT 943
|| |||.||| ||||||.| ||| |||..|
BL02894___hmp 933 --CA--AGGAAGAAACGGAGAAGCTGCTCGGCGCCAATCCGGCGAACCGT 978
BSNT_02196___ 944 CTGCTGTT--AAAACAGCATTTGTG-TATCGCGAGCCGACAGAG------ 984
||.||||| ...||||||...||| |...|||| ||..||||
BL02894___hmp 979 CTCCTGTTCGTCTACAGCAGAGGTGCTGAAGCGA--CGGAAGAGCATACT 1026
BSNT_02196___ 985 ---GAAGACCGTGCAGGTGATCTGCATTTTCATGAAGGACAG--ATTGAT 1029
.|||.||| ||||| |||||| || .||||
BL02894___hmp 1027 GTAAAAGGCCG----GGTGA-----------ATGAAG---AGCTTTTGA- 1057
BSNT_02196___ 1030 CAGCAAT---TCCTCAAAGAACTGATTGCCAACACAGAT-GCGGATTACT 1075
||| ||.|.|.|||.| ||.|| |||.||| .|
BL02894___hmp 1058 ----AATCGGTCGTGATAGATC------------CAAATGGCGAATT-TT 1090
BSNT_02196___ 1076 ATATTTGTGGTTCACCGTCGTTT------------ATTACAGCAATGCAT 1113
||.|.||.|||.|.|..||.||| |||..||.|.||||.
BL02894___hmp 1091 ATGTATGCGGTCCGCTTTCATTTATGAAAAGCGTGATTGAAGGATTGCAA 1140
BSNT_02196___ 1114 AAGCTTG-----------------------TATCAGAGCTCGGATCGGCG 1140
||.|||| |||.||||||..|.|
BL02894___hmp 1141 AACCTTGGCGTTTCGATGGAAAACATCCGCTATGAGAGCTTTGCT----- 1185
BSNT_02196___ 1141 CCGGAGTCTATCCATTACGAGCTATTCGGCCCGCAATTAAGTTTGGCGCA 1190
|| |||..|| |.||| ||||.|| |||.|
BL02894___hmp 1186 ------TC-ATCTCTT----GATAT-------GCAAATA------GCGAA 1211
BSNT_02196___ 1191 GTCCGTTTGA- 1200
.| |
BL02894___hmp 1212 CT-------AA 1215
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