Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01611 and BL02895

See Amino acid alignment / Visit BSNT_01611 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01611___yhdC.1.5803.seq
#    -bsequence dna-align/BL02895.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01611___yhdC-BL02895.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01611___yhdC-BL02895.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01611___yhdC
# 2: BL02895
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity:     215/354 (60.7%)
# Similarity:   215/354 (60.7%)
# Gaps:          63/354 (17.8%)
# Score: 570.0
# 
#
#=======================================

BSNT_01611___      1 ATGAAATCTCTGCCGTATAC--CATTGCGCTT--CTTTTTTGCGGATTGA     46
                     ||||||          |.||  .|||||.|.|  .||||||||..|||.|
BL02895            1 ATGAAA----------AAACGATATTGCACGTACTTTTTTTGCATATTAA     40

BSNT_01611___     47 -----TTATCGTGTCAATGGCTGCAAAAGGTCA--TTCAACGGACACAAA     89
                          |||     |||.|..|.||.|||||.||  |||||     |||.|
BL02895           41 CACTTTTA-----TCATTCCCGGCGAAAGGCCACTTTCAA-----ACAGA     80

BSNT_01611___     90 ------CGAGTCCGTTCAAAAGTGGGAACAG-CTTGCCTGGAGCAAAATT    132
                           |||..|...|.||..||||||| || .|.|||||||||....||
BL02895           81 TGTTTTCGATGCACCTGAACGGTGGGAA-AGAATCGCCTGGAGCGCGCTT    129

BSNT_01611___    133 CAGGATGAATATAAGGGCGCTTCATTTTC--TGATTATGCTTATATGGGG    180
                     .|.||..||||.||.|||||  .|...||  .|||||||..|||.|.|||
BL02895          130 GAAGAAAAATACAAAGGCGC--AAAGCTCGAGGATTATGAATATTTAGGG    177

BSNT_01611___    181 CGTACAGAGGTGAATGATCAGCAGACGAAAGATGTCTTTCGGGTGACAGT    230
                     ||.|||.|.||.||||||.|..||||.||.||||||||..||||.||.||
BL02895          178 CGCACACAAGTAAATGATGAAGAGACAAAGGATGTCTTCAGGGTAACCGT    227

BSNT_01611___    231 CAGACAGAAAGATGACA---CTTTTTCTGTTCGGGCCGAAGTCTATTTTC    277
                     ||   |..||||.|.||   |.|||||.|..|..|||||.||.|||||||
BL02895          228 CA---ATCAAGAAGGCAAATCATTTTCGGCGCACGCCGAGGTGTATTTTC    274

BSNT_01611___    278 ATCCGGTGACAAAT-CATATGATCAGCA---TCAACGTCTTTAGGCTCTA    323
                     ||||||||||.||| |    |||||.||   ||||..|.|||   |.||.
BL02895          275 ATCCGGTGACCAATGC----GATCATCAATGTCAATATTTTT---CCCTT    317

BSNT_01611___    324 A---    324
                     |   
BL02895          318 ATAG    321


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