Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01609 and BL02896
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01609___yhdA.1.5803.seq
# -bsequence dna-align/BL02896___azr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01609___yhdA-BL02896___azr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01609___yhdA-BL02896___azr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01609___yhdA
# 2: BL02896___azr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity: 352/576 (61.1%)
# Similarity: 352/576 (61.1%)
# Gaps: 108/576 (18.8%)
# Score: 1031.0
#
#
#=======================================
BSNT_01609___ 1 ATGAACATGTTAGTCATAAATGGCACGCCTAGAAAACATGGCAGAACAAG 50
|||||.||....||.||.|..||.||..|.||||||||.||||||||..|
BL02896___azr 1 ATGAAAATAACCGTAATTAGCGGAACTGCGAGAAAACAGGGCAGAACGCG 50
BSNT_01609___ 51 AATTGCAGCATCCTATATTG-CAGCTCTGTATCACACGGATTTGATTGAT 99
.||.||.||.||||||||.| |.||.|| |||||..|.||..|.||.|||
BL02896___azr 51 GATCGCCGCTTCCTATATCGCCCGCGCT-TATCAGGCTGAGCTTATCGAT 99
BSNT_01609___ 100 CTAAGCGAGTTTGTATTGCCCGTTTTTAACGGTGAAGCGGATCAA---TC 146
|||||||||||..|..|.||..||||.|||||.||.|..||.||| ||
BL02896___azr 100 CTAAGCGAGTTCATCCTTCCGATTTTCAACGGAGACGAAGAGCAAAGCTC 149
BSNT_01609___ 147 -----TGAACTGTTGAAA----GTACAGGAGCTTAAGAAACGCGTTACGA 187
.||| ||||.||| |.| ||||| || ||.|...
BL02896___azr 150 GCTGGAGAA-TGTTCAAAAATTGAA----AGCTT------CG-GTCAAAG 187
BSNT_01609___ 188 AAGCGGATGCGATTGTATTATTATCGCCTGAATATCACAGCGGCATGAGC 237
||||.||.||..|.||.||||||||.||.|||||.||||||||.||||||
BL02896___azr 188 AAGCAGACGCTGTCGTTTTATTATCTCCCGAATACCACAGCGGTATGAGC 237
BSNT_01609___ 238 GGCGCTTTAAAAAATGCTTTGGATTTTCTAAGCAGCGAACAATT------ 281
||||||||.||||||||..|.||||||.||||||..||.||.||
BL02896___azr 238 GGCGCTTTGAAAAATGCACTCGATTTTTTAAGCAATGAGCAGTTCTCGGG 287
BSNT_01609___ 282 CAAATATAAGCCCGTTGC-ATTATTGGCAGTAGCGGGAGGCGGAAAAGGC 330
|||| ||.||.|| .||.|||...|| ||.||.|||||.||||||
BL02896___azr 288 CAAA------CCGGTGGCGCTTTTTGCTTGT-GCAGGGGGCGGCAAAGGC 330
BSNT_01609___ 331 GGCATCAATGCGCTGAACAATATGAGAACTGTGATGCGGGGTGTCTACGC 380
||.||.||.|||||...|||||||.|.|.|||....||.||.||.||.||
BL02896___azr 331 GGGATGAACGCGCTCGCCAATATGCGCATTGTCGCACGCGGAGTTTATGC 380
BSNT_01609___ 381 CAATGTCATTCCGAAGCAGCTGGTGCTTGATCCGGTGCATATTGATGTTG 430
.||.|||||..|.||||||||.|||||.||||||.|.||||||||||..|
BL02896___azr 381 GAACGTCATCACAAAGCAGCTTGTGCTCGATCCGATTCATATTGATGAGG 430
BSNT_01609___ 431 A-----AAATGCTACAGTGGCTGAA------------AACATTAAGGAAA 463
| || ||.||..||||| ||.||||| |||
BL02896___azr 431 AGCACCAA-----ACGGTTACTGAAGCAGCCAAAGCCAATATTAA--AAA 473
BSNT_01609___ 464 -GCATAA---AAGAGC---------TTGTCGAAGAACTCAGCATGTTCGC 500
| ||| |||||| |||.|||| |..|
BL02896___azr 474 TG--TAATGGAAGAGCTTCTGCTCTTTGCCGAA-------------TTTC 508
BSNT_01609___ 501 AAAAA-CAGGAAATCCCGGCGTCTAA 525
||||| |..||
BL02896___azr 509 AAAAAGCCTGA--------------- 519
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