Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01605 and BL02898

See Amino acid alignment / Visit BSNT_01605 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_01605___yhcY.1.5803.seq
#    -bsequence dna-align/BL02898___yhcY.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01605___yhcY-BL02898___yhcY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01605___yhcY-BL02898___yhcY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01605___yhcY
# 2: BL02898___yhcY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity:     746/1278 (58.4%)
# Similarity:   746/1278 (58.4%)
# Gaps:         267/1278 (20.9%)
# Score: 1878.5
# 
#
#=======================================

BSNT_01605___      1 -----GTGAG---CAAAATGAGGATGGAAAAATTAAAAACGCTGAAAACG     42
                          |..||   ||.|     |.|.||||||.|.||||||||.|||...
BL02898___yhc      1 TTGCGGGAAGACACACA-----GTTTGAAAAACTGAAAACGCTCAAAGAA     45

BSNT_01605___     43 ATTGCCGAAACCTTAAATCAAGGGCACGATATCAAAGCAACACTGGATGA     92
                     ||.||.|||||.|||||..|||||.|||||.|.||.|.|||.||..|||.
BL02898___yhc     46 ATAGCGGAAACTTTAAACGAAGGGAACGATCTAAAGGAAACGCTCCATGC     95

BSNT_01605___     93 GGTTTTAAAAGAGTTGCTGAGTCT-----GACAAACCTTCAATCCGG-AT    136
                     .||||||||..||.||||..|.||     |||      ||||..||| ||
BL02898___yhc     96 CGTTTTAAAGAAGCTGCTCCGCCTAACGGGAC------TCAAAACGGCAT    139

BSNT_01605___    137 GGATTTTTTTGATCGAAGAAGATGGGTCTTATACGTTAGC--------GG    178
                     ||.|||||.|||||||.|||.|.|||           |||        ||
BL02898___yhc    140 GGCTTTTTCTGATCGATGAAAAGGGG-----------AGCTTTGAACTGG    178

BSNT_01605___    179 CCGACGCTTATCTGCCC-CCGGCTTTAAGCC--------GCAAGGAAAAA    219
                     |   .|||  ||.|||| ||.||.|.|||||        .|  ||.||||
BL02898___yhc    179 C---TGCT--TCGGCCCGCCTGCCTCAAGCCCTTTCTTACC--GGCAAAA    221

BSNT_01605___    220 GTGCTGA-TGTGCGAAGGGGAG-TGTTACTGCCTGACGAAATTCAATA-A    266
                     ..|.|.| |.|||||| ||.|| ||.|||||.||  .|||   ||||| |
BL02898___yhc    222 CCGTTTACTATGCGAA-GGAAGCTGCTACTGTCT--TGAA---CAATACA    265

BSNT_01605___    267 CGGAGGGCTTAGAAAGGCTG----------CAAATATCATGAACTGCAAA    306
                     .|||      .||||.||||          .|||||||||..|||||...
BL02898___yhc    266 GGGA------CGAAAAGCTGGACAGGGCGAAAAATATCATCCACTGCCGG    309

BSNT_01605___    307 CG------------CATCGAATCAGCAGAAAACCTGCATTGTTTTGACAC    344
                     ||            ||| |||.|||.|||    |.|.|       ||..|
BL02898___yhc    310 CGGATTACGACGGCCAT-GAAACAGAAGA----CAGGA-------GATCC    347

BSNT_01605___    345 AGAAGGGATTACGCATCATGCAACTGTGCCTTTAGAAGACGGGGAC----    390
                     .|||||.||.||.|||||||||||.||.||..|      |.|.|||    
BL02898___yhc    348 GGAAGGCATCACCCATCATGCAACCGTCCCGCT------CAGTGACCAAA    391

BSNT_01605___    391 AGAA--GATTCGGATTGTTAAATGTGGCGGCGGCCGGAAAAACCATGTTT    438
                     ||||  |.|||||.|||.|.||.||.|||||..|.||.||||      ||
BL02898___yhc    392 AGAAGCGGTTCGGTTTGCTGAACGTTGCGGCACCGGGCAAAA------TT    435

BSNT_01605___    439 GAT---------GAGGAAGAGCTGCATTTACTCGAATCTGTCGCCTTTCA    479
                     .||         |.||||   |||....|.||||||.||||.||..|.||
BL02898___yhc    436 CATTTCAGCCGCGGGGAA---CTGGCGCTCCTCGAAGCTGTTGCTCTGCA    482

BSNT_01605___    480 GATCGGAACGGCAATCCAGCGTATGAGGCTTTCCGAATATCAACAAAAAA    529
                     .|||||.|.|||.|||.|.||.|||||||||.|.|||.|.||.||||||.
BL02898___yhc    483 AATCGGGATGGCGATCAAACGGATGAGGCTTGCTGAACAACAGCAAAAAC    532

BSNT_01605___    530 A--TGCT-CTTTTAATGGAGC----GTAACCGCCTCGCTCAGGAGCTT-C    571
                     |  |||| ||       ||.|    |.|||.|..|.|||||||| ||| |
BL02898___yhc    533 ACCTGCTGCT-------GACCGAAAGAAACAGATTGGCTCAGGA-CTTGC    574

BSNT_01605___    572 ACGATTCAGTCAATCAAATGCTGTTTTCCGTCAGTTTAACTGCCAAAGCT    621
                     |.|||||.||.|||||||||||.|||||..||||.||.||.||.|||||.
BL02898___yhc    575 ATGATTCCGTTAATCAAATGCTTTTTTCGCTCAGCTTGACCGCTAAAGCG    624

BSNT_01605___    622 GCGAAGACACTAACAAA--AGATGAGAATTTACA-GCAGATGATTGAATT    668
                     |||..|..|.|.|||.|  ||..|..|||   || |.|.|||.|.||.||
BL02898___yhc    625 GCGGGGGAAATGACAGACCAGCCGGAAAT---CAGGGAAATGCTCGAGTT    671

BSNT_01605___    669 CATCCAAAACCTATCACAGGACGCGCTCGCAGAAATGAAAGCGTTAATTT    718
                     .||.|||||.||.||.||.||.|||||....||.|||...||||||||||
BL02898___yhc    672 TATGCAAAATCTTTCTCATGAAGCGCTTCTTGAGATGCGGGCGTTAATTT    721

BSNT_01605___    719 GGCAGCTTCGTCCCGGAGGATTGGAAAAAGGGCTGGCTGAAGCCATTAAA    768
                     |||||||..|.|||...||..|||||.|||||.|.||.|..||..||.||
BL02898___yhc    722 GGCAGCTCAGGCCCCAGGGGCTGGAAGAAGGGTTAGCGGCGGCTCTTGAA    771

BSNT_01605___    769 AGCTATG-----GTGCGCTCATTGG-ATTGAAGATCATTTTTA--CACAA    810
                     |..||||     ||||     |.|| .||.||| |.||.||.|  |.|| 
BL02898___yhc    772 AAATATGCGGAAGTGC-----TCGGCCTTCAAG-TAATCTTCAAGCTCA-    814

BSNT_01605___    811 AAAGGC--TGTCCT--GTTCTG------ACTGATGAGCAGGAGCATATGC    850
                         ||  |||.||  | ||||      .|||.||||     |.|| ||.
BL02898___yhc    815 ----GCGATGTGCTCCG-TCTGCCCCCTTCTGTTGAG-----GAAT-TGA    853

BSNT_01605___    851 TATGGCGTGTCGTCCAGGAAGCTTTAAATAACTGCAAAAAGCATGCCGG-    899
                     |.|||||..|...|||||||||..|.||.||.||||||||||||||||| 
BL02898___yhc    854 TGTGGCGGCTGAGCCAGGAAGCCCTCAACAATTGCAAAAAGCATGCCGGT    903

BSNT_01605___    900 --AA--CGGATACGGCGT--------ATGT----TAGTCTGACTG-CTTC    932
                       ||  ||.|||| ..||        ||||    .|||| |.||| |.||
BL02898___yhc    904 GCAAGCCGCATAC-AAGTGAAAATCAATGTATTCCAGTC-GTCTGCCGTC    951

BSNT_01605___    933 TTTGTGCCATGCGGAGCTGGATATCATCGATCATG-GGGC---GGGATTT    978
                     |                ||||   .|||||..||| .|||   ||| |||
BL02898___yhc    952 T----------------TGGA---AATCGAAGATGACGGCAAAGGG-TTT    981

BSNT_01605___    979 CGCTATGAAGCGCATGCCGGTC-TGCCTTCACTTGGCATCAAGGGTATGA   1027
                     |..||.||..|..||| .||.| |.||..|.|||||..|.||.||.||||
BL02898___yhc    982 CAGTACGATCCTAATG-TGGACATTCCGACGCTTGGGCTGAAAGGAATGA   1030

BSNT_01605___   1028 AAGAACGGGCGGAAAAAGCCGGCGCTAAGTTTTGGATTGAGTCAGCGCTT   1077
                     |.||.|||.||||||||||.||||..|.|.|||.|||....||.||..|.
BL02898___yhc   1031 AGGAGCGGACGGAAAAAGCGGGCGGCACGCTTTTGATCACCTCCGCAATC   1080

BSNT_01605___   1078 GGAACTGGAACAAAGCTGTCCATCAGG-----CTTCCGCTAACAAGCCGA   1122
                     ||.|..||.|||||      .|||.||     .||.| |||..|||  ||
BL02898___yhc   1081 GGTAAGGGGACAAA------AATCCGGGCGGTTTTGC-CTATGAAG--GA   1121

BSNT_01605___   1123 AAAGGAGG-GGCGGTATGA---------   1140
                     .||||.|| |||.|.|||.         
BL02898___yhc   1122 GAAGGGGGAGGCAGGATGGAGAAGGTGA   1149


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