Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01603 and BL02901

See Amino acid alignment / Visit BSNT_01603 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_01603___yhxB.1.5803.seq
#    -bsequence dna-align/BL02901___pgcA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01603___yhxB-BL02901___pgcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01603___yhxB-BL02901___pgcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01603___yhxB
# 2: BL02901___pgcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1800
# Identity:    1282/1800 (71.2%)
# Similarity:  1282/1800 (71.2%)
# Gaps:         105/1800 ( 5.8%)
# Score: 4354.0
# 
#
#=======================================

BSNT_01603___      1 ATGACTTGGAGAAAGAGCTATGAACGCTGGAAACAGACAGAACATTTAGA     50
                     ||||..|||||||.|||||||||||||||||.|.|.|.||||.|.|||||
BL02901___pgc      1 ATGAGCTGGAGAACGAGCTATGAACGCTGGAGAAACAAAGAAAACTTAGA     50

BSNT_01603___     51 TCCGGAATTAAAAGAGCGCCTTATTGAATTAGAGGGAGATGAACAGGCCC    100
                     |.|.||||||||||.||..|||.|.|||...||.|||.|||||.|.|..|
BL02901___pgc     51 TTCCGAATTAAAAGCGCTTCTTTTGGAAGCGGAAGGAAATGAAAAAGAAC    100

BSNT_01603___    101 TTGAGGACTGTTTCTATAAAGACCTTGAATTCGGTACCGGCGGAATGCGC    150
                     |.|||||.||.||.||||||.|.|||||.||.|||||.|.|||.||||||
BL02901___pgc    101 TAGAGGATTGCTTTTATAAAAAACTTGAGTTTGGTACAGCCGGTATGCGC    150

BSNT_01603___    151 GGAGAAATCGGCGCCGGG-ACAAATCGGATGAATATTTACACTGTGCGCA    199
                     ||.||.||||| .||||| .|.||.||.|||||..||||.||.||.||||
BL02901___pgc    151 GGTGAGATCGG-ACCGGGCCCGAACCGCATGAACGTTTATACGGTTCGCA    199

BSNT_01603___    200 AAGCATCGGCCGGGTTTGCGGCATACATCTCGAAGC--AAGGTGAGGAAG    247
                     ||||||||||.||..||||.|||||||  |.|.|||  |.||.|..||||
BL02901___pgc    200 AAGCATCGGCGGGCCTTGCCGCATACA--TAGGAGCGAACGGCGGCGAAG    247

BSNT_01603___    248 CGAAAAAACGGGGCGTTGTCATTGCTTATGATTCCCGCCATAAATCTCCG    297
                     |.|||||.||.||||||||.||.||.||.|||||||||||.|||||.||.
BL02901___pgc    248 CAAAAAAGCGCGGCGTTGTGATCGCGTACGATTCCCGCCACAAATCGCCT    297

BSNT_01603___    298 GAGTTCGCGATGGAAGCGGCAAAAACACTTGC-GACACAAGGCATCCAAA    346
                     ||.||.||.||||||||.||.||.||.||.|| || |.|.|||.|.||||
BL02901___pgc    298 GAATTTGCAATGGAAGCTGCTAAGACGCTCGCAGA-AAACGGCGTTCAAA    346

BSNT_01603___    347 CATACGTGTTTGATGAGCTTCGCCCGACGCCAGAGCTGTCATTCGCTGTC    396
                     |.|||||||||||.||.||.||||||||.||.||.||.||.||.||.||.
BL02901___pgc    347 CGTACGTGTTTGACGAACTGCGCCCGACACCTGAACTTTCCTTTGCGGTA    396

BSNT_01603___    397 AGACAGCTGAACGCTTATGGAGGGATTGTGGTAACGGCAAGCCATAACCC    446
                     |||.|.|||||.||.|.||.|||.|||||..|.|||||.|||||||||||
BL02901___pgc    397 AGAGAACTGAATGCGTTTGCAGGTATTGTCATCACGGCGAGCCATAACCC    446

BSNT_01603___    447 GCCTGAATATAACGGCTACAAAGTATACGGGGATGATGGCGGCCAGCTGC    496
                     |||||||||.||||||||.|||||.|||||.||.||.||||..|||||.|
BL02901___pgc    447 GCCTGAATACAACGGCTATAAAGTGTACGGAGAGGACGGCGCGCAGCTTC    496

BSNT_01603___    497 CTCCAAAGGAAGCGGACATCGTCATTGAGC-AGGTAAACGCGATTGAAAA    545
                     |.||....||.||.||||...|||..| || |.||.||.|||||.|||||
BL02901___pgc    497 CGCCTGCTGATGCCGACAAACTCACCG-GCTATGTCAATGCGATAGAAAA    545

BSNT_01603___    546 TGAGCTGACGATCACAG-TGGACGAAGAAAATAAGTTAAAAGAAAAAGGC    594
                     .||.|||...|||..|| .||| ||.|||..|...||||..||||||||.
BL02901___pgc    546 CGAACTGGAAATCGAAGCCGGA-GATGAAGCTGCTTTAACCGAAAAAGGG    594

BSNT_01603___    595 TTAATTAAAATCATCGGTGAAGATATTGATAAAGTTTATACAGAAAAACT    644
                     .|.||||||||.|||||.||.||.||.|||.|||..|||...||.|||||
BL02901___pgc    595 CTGATTAAAATAATCGGCGAGGAAATCGATCAAGCGTATCTCGATAAACT    644

BSNT_01603___    645 GACGTCCATTTCTGTACATCCTGAATTATCGG---AAGAAGTA--GATGT    689
                     |||.||.||||||||..|.||||    |||.|   |||.|| |  ||.||
BL02901___pgc    645 GACATCGATTTCTGTCAACCCTG----ATCTGGCAAAGGAG-ACCGAAGT    689

BSNT_01603___    690 AAAGGTTGTTTTCACACCGCTGCATGGAACTGCAAATAAACCGGTCAGAC    739
                     .||.||..|.|||||.|||||.||.||.||.|||||.||..|.|||||||
BL02901___pgc    690 CAAAGTCATCTTCACCCCGCTTCACGGCACGGCAAACAAGTCTGTCAGAC    739

BSNT_01603___    740 GCGGTCTTGAAGCACTCGGCTACAAAAATGTAACGGTTGTCAAAGAACAG    789
                     |.||.||..||||.|||||.||..||.||||.||.||.|||...||||||
BL02901___pgc    740 GGGGCCTGAAAGCTCTCGGGTATGAACATGTCACAGTCGTCCCCGAACAG    789

BSNT_01603___    790 GAACTGCCGGATTCAAACTTCTCCACTGTTACATCGCCAAACCCGGAAGA    839
                     ||.||.||.||..|..||||.||.||.||..|.||.||.||.||||||||
BL02901___pgc    790 GAGCTCCCTGACCCTGACTTTTCGACCGTATCTTCTCCGAATCCGGAAGA    839

BSNT_01603___    840 GCATGCGGCATTCGAATATGCCATTAAGCTTGGGGAGGAGCAGAA-----    884
                     |||.||.||.||.||||||||.||.|..||     |||||.||||     
BL02901___pgc    840 GCACGCCGCTTTTGAATATGCGATCAGACT-----AGGAGAAGAAAATGG    884

BSNT_01603___    885 TGCAGATATTCTCATCGCGACAGATCCTGATGCTGACCGCCTCGGCATCG    934
                     .||.||.|||||.||||..||.|||||.||.||.|||||.||||||.|||
BL02901___pgc    885 AGCCGACATTCTGATCGGAACCGATCCAGACGCAGACCGGCTCGGCGTCG    934

BSNT_01603___    935 CGGTGAAAAACGATCAAG------GCAAATATAC--AGTGCTGACAGGAA    976
                     |.||   |||.|||||||      ||     |||  ||||||||||||||
BL02901___pgc    935 CTGT---AAAGGATCAAGAAGGCCGC-----TACGTAGTGCTGACAGGAA    976

BSNT_01603___    977 ACCAAACCGGAGCGCTGCTGCTTCATTACCTGCTTTCTGAAAAGAAAAAA   1026
                     |.||||||||.||||||||.||.|||||.|||||.||      |.|||||
BL02901___pgc    977 ATCAAACCGGCGCGCTGCTCCTGCATTATCTGCTGTC------GCAAAAA   1020

BSNT_01603___   1027 C------AAGGCATCCTGCCTGATAACGGTGTTGTTCTCAAAACGATCGT   1070
                     |      |||||||.||||||||||||||.||.|||||.||||||||.||
BL02901___pgc   1021 CAGCAGAAAGGCATGCTGCCTGATAACGGCGTCGTTCTGAAAACGATTGT   1070

BSNT_01603___   1071 CACAAGTGAAATCGGCCGTGCTGTAGCTTCTTCATTCGGCCTTGATACGA   1120
                     .||.||.|||||.||.||.|...|.||..||||.|||||.||.||.||||
BL02901___pgc   1071 GACGAGCGAAATGGGGCGCGACATCGCCGCTTCTTTCGGACTGGACACGA   1120

BSNT_01603___   1121 TTGATACGCTGACAGGCTTTAAGTTTATCGGTGAAAAGATTAAGGAATAC   1170
                     |.||.||||||||.||||||||.||.|||||.|||||.||.||..|||..
BL02901___pgc   1121 TCGACACGCTGACCGGCTTTAAATTCATCGGAGAAAAAATCAAACAATTT   1170

BSNT_01603___   1171 GAGGCATCAGGCCAGTATACCTTCCAATTCGGTTATGAAGAGAGCTACGG   1220
                     ||.|||||.|||.|.|||.|.|||||||||||||||||.||.||||||||
BL02901___pgc   1171 GAAGCATCGGGCGAATATGCTTTCCAATTCGGTTATGAGGAAAGCTACGG   1220

BSNT_01603___   1221 TTATTTAATCGGGGATTTTGCCCGCGATAAGGACGCCATTCAGGCTGCGC   1270
                     .||.||.|||||.||.||.||..|.||.|||||.|||.|.|||||.||.|
BL02901___pgc   1221 CTACTTGATCGGCGACTTCGCAAGGGACAAGGATGCCGTCCAGGCCGCAC   1270

BSNT_01603___   1271 TTTTGGCAGTTGAAGTTTGCGCGTTCTATAAAAAACAGGGAATGTCTTTG   1320
                     |..|.||.||||||||.|||||.|||||||||||.|||||||..||..|.
BL02901___pgc   1271 TGCTTGCCGTTGAAGTATGCGCCTTCTATAAAAAGCAGGGAAAATCGCTT   1320

BSNT_01603___   1321 TATGAGGCGCTCATC-AATCTCTTTAACGAGTATGGTTTTTATCGTGAAG   1369
                     |||||.|.||||.|| ||| |.|.|||...||..||.||.|||.|.||||
BL02901___pgc   1321 TATGACGGGCTCCTCGAAT-TGTATAAATCGTTCGGCTTCTATAGAGAAG   1369

BSNT_01603___   1370 GGCTGAAATCCCTGACGCTGAAAGGCAAACAAGGAGCAGAGCAAATTGAA   1419
                     |..||||.||||||||..|.|||||.|||.|.|||||.||||||||.|.|
BL02901___pgc   1370 GCTTGAAGTCCCTGACCTTAAAAGGAAAAGAGGGAGCGGAGCAAATCGCA   1419

BSNT_01603___   1420 GCGATTCT-TGCTTCCTTCAGACAAAATCCGCCGCAGAAAATGGCGGGCA   1468
                     ||.||.|| .|| .|.||||||.||.|.|||||.|.....||.||.||.|
BL02901___pgc   1420 GCCATCCTCAGC-ACATTCAGAGAACAGCCGCCTCTTTCCATCGCCGGAA   1468

BSNT_01603___   1469 AACAGGTTGTCACAGCAGAAGATTACGCTGT---AAGCAAACGGACGCTT   1515
                     ||.|.||.||..|.||.|||||.||   |.|   |.|.||.||||||||.
BL02901___pgc   1469 AAGATGTCGTATCCGCCGAAGACTA---TTTGACAGGGAAGCGGACGCTG   1515

BSNT_01603___   1516 CTGACTGAAAGCAAAGAAGAAGCCATCGACTTGCCAAAATCAAATGTATT   1565
                     ||.|..||||.||||...|||.|.||||||.|.||.|||||.|||||.||
BL02901___pgc   1516 CTAAAGGAAAACAAAAGGGAAACGATCGACCTTCCGAAATCCAATGTTTT   1565

BSNT_01603___   1566 GAAATACTTCCTGGAAGACGGGTCTTGGTTCTGTCTTCGTCCTTCTGGAA   1615
                     ||||||.|||||.||||||||.||.||||||||.||.|||||.||.||||
BL02901___pgc   1566 GAAATATTTCCTTGAAGACGGCTCATGGTTCTGCCTCCGTCCATCAGGAA   1615

BSNT_01603___   1616 CTGAGCCGAAGGTGAAATTTTATTTCGCCGTAAAAGGGTC-------ATC   1658
                     |.|||||.||.|||||||||||||||||.||.|||||  |       || 
BL02901___pgc   1616 CAGAGCCTAAAGTGAAATTTTATTTCGCGGTCAAAGG--CCGAACCAAT-   1662

BSNT_01603___   1659 TTTGGAAGACAGTGAACAGCGTCTTGCCGCCCT-------TT--CTGAAG   1699
                         |||||.||.||  |||| |||      ||       ||  |.||.|
BL02901___pgc   1663 ----GAAGAAAGCGA--AGCG-CTT------CTCAATCAATTGACAGACG   1699

BSNT_01603___   1700 ATGTAATGAAGACGGTGGATGAAATTGTTGAGTCGACGGCAAA---ATAA   1746
                     |.||.|||||.|...|.||.||.|||||..|..||||..||||   .|||
BL02901___pgc   1700 AAGTGATGAAAAAAATCGACGATATTGTAAAAGCGACCTCAAATTCGTAA   1749


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