Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01703 and BL02904

See Amino acid alignment / Visit BSNT_01703 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01703___yhaI.1.5803.seq
#    -bsequence dna-align/BL02904___yhaI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01703___yhaI-BL02904___yhaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01703___yhaI-BL02904___yhaI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01703___yhaI
# 2: BL02904___yhaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity:     243/360 (67.5%)
# Similarity:   243/360 (67.5%)
# Gaps:          39/360 (10.8%)
# Score: 774.5
# 
#
#=======================================

BSNT_01703___      1 ---------ATGGATCATCGCATTGAGCGATTAGAATATTACATACAATT     41
                              |||||.||.|||.|.|||||..|.|||||||||||..||.|
BL02904___yha      1 ATGAACTCAATGGAGCAACGCCTCGAGCGGCTGGAATATTACATCAAACT     50

BSNT_01703___     42 ATTAGTGAAAACAGTAGATATGGACAG-GTACCCCTTCTATGGGCTTCTC     90
                     .|||.||||.|..|..|||||||| || |||.||.|.||||....|    
BL02904___yha     51 GTTATTGAACAATGCGGATATGGA-AGAGTATCCGTACTATAAAAT----     95

BSNT_01703___     91 ATTGAT---AAAGGGCTGAGCA-AGGAAGAAG---GGGAAGCGGTTATGA    133
                     ||||||   ||||||||.|.|| |||||||||   .||||.|||   ..|
BL02904___yha     96 ATTGATCGAAAAGGGCTTATCAGAGGAAGAAGCAAAGGAAACGG---AAA    142

BSNT_01703___    134 GGATATGCGACGAATTGTCGGAAGAGCTGGCAACACAAAAAGCGCAAGGA    183
                     .|.|.|||||.||..|.||..|.|||||.|.|.|||||||||||||||||
BL02904___yha    143 AGCTGTGCGAAGAGCTCTCAAAGGAGCTTGAAGCACAAAAAGCGCAAGGA    192

BSNT_01703___    184 TTTGTAACCTTTGATAAGCTCCTTGCGCTTTTTGCCGGACAGCTGAATGA    233
                     |||||.|..||.|||.|.|||||..|||||||||||||||||.|.|||||
BL02904___yha    193 TTTGTGATGTTCGATCATCTCCTCACGCTTTTTGCCGGACAGTTAAATGA    242

BSNT_01703___    234 AAAATTAGATGTTCATGAAACGATTTTTGCCCTGTATGAG-CAGGGACTT    282
                     ||||.|.||.||.||.|||||||||||.||||| |...|| ||.||.|||
BL02904___yha    243 AAAACTTGAAGTGCACGAAACGATTTTCGCCCT-TCACAGACAAGGTCTT    291

BSNT_01703___    283 TATCAAGAGCTGATG---GAAGTCTTTATCGACATCATGAAGCATTTTGA    329
                     ||..||..|||||||   |||   ||.|||..|||.||.|.|||.|..||
BL02904___yha    292 TACAAACCGCTGATGAGCGAA---TTCATCAGCATTATCAGGCAGTACGA    338

BSNT_01703___    330 T-----TAA-    333
                     |     |.| 
BL02904___yha    339 TCTGGCTTAG    348


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