Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00757 and BL02923

See Amino acid alignment / Visit BSNT_00757 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_00757___ydbA.1.5803.seq
#    -bsequence dna-align/BL02923___ydbA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00757___ydbA-BL02923___ydbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00757___ydbA-BL02923___ydbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00757___ydbA
# 2: BL02923___ydbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 868
# Identity:     587/868 (67.6%)
# Similarity:   587/868 (67.6%)
# Gaps:          92/868 (10.6%)
# Score: 1887.5
# 
#
#=======================================

BSNT_00757___      1 GTGC----CAACAGAACGAAAAGAAGACTTACATCAGCAATTAAAAGAGA     46
                     ||||    |.|||.|||       |||.||..|..|..||.|.|||.|.|
BL02923___ydb      1 GTGCGCTACGACAAAAC-------AGATTTGGAAAACGAACTGAAAAAAA     43

BSNT_00757___     47 TAGAGAAATGGGAAAAAGATCAGCAAAAAGTCTGGTTTTGGGAAAAGCTC     96
                     |.||.|||||||||||.||.|||||.||||..|||||||||||||.|.||
BL02923___ydb     44 TTGAAAAATGGGAAAAGGAACAGCAGAAAGCATGGTTTTGGGAAAGGATC     93

BSNT_00757___     97 AGCCGTCTCCCGTTTCAGCTGCTGGACAAGCTGACACCGGAATTCA-TCC    145
                     .||||.||.|||||..|..|.|||||||||||.||.||||.||||| ||.
BL02923___ydb     94 GGCCGGCTGCCGTTCAAAGTTCTGGACAAGCTTACGCCGGCATTCATTCA    143

BSNT_00757___    146 AGAAAAAGATCGGCAAGCTCTTGGATGAGGTCGGCAGCTTTGTTCAAACA    195
                     |||.||| ||||||..|||..|.||.||..|||||.|||||.||||||..
BL02923___ydb    144 AGATAAA-ATCGGCCTGCTGCTAGACGAAATCGGCGGCTTTATTCAAAAT    192

BSNT_00757___    196 GGCGGACAGTACCTGACATCTGAAAAACAGATTATCAGGATGTTTCAAAA    245
                     ||.||.||.||..||||.||.|||||.||..|.|||.|...|||||||||
BL02923___ydb    193 GGAGGCCAATATTTGACGTCCGAAAAGCATCTGATCCGCCAGTTTCAAAA    242

BSNT_00757___    246 GAAACTGCCGGAGGA---GATCTTTGAATCGCTGGAGGACATCCGGAAAG    292
                     .||.||||||||.||   ||||   |||.||.|.||.||.||.|  ||.|
BL02923___ydb    243 AAAGCTGCCGGATGAAACGATC---GAAACGATTGAAGATATTC--AATG    287

BSNT_00757___    293 CGCCTCTTCCT------GTCATGGATGAAAT-TGCGGAAGGAAT---GGG    332
                     .||    ||||      ||.||||||.|||| ||.|.|   |||   |||
BL02923___ydb    288 GGC----TCCTTTGGAAGTGATGGATCAAATATGTGAA---AATCTCGGG    330

BSNT_00757___    333 CAAAAACAGAACCAA---CGCAGCAACCGTTCAAGGCGCGACAACCGGTG    379
                      ||||||||..|.||   |||||||   ||.|||||.|||||||||||||
BL02923___ydb    331 -AAAAACAGGGCGAATACCGCAGCA---GTCCAAGGAGCGACAACCGGTG    376

BSNT_00757___    380 TGGGCGGCGTGTTTACGCTGGCGGCAGACATTCCGGCAGTGCTTGGCTTA    429
                     ||||||||.||||.|||||.||.|..||.|||||.|||.|.||.|||.|.
BL02923___ydb    377 TGGGCGGCTTGTTCACGCTTGCCGTCGATATTCCCGCAATCCTCGGCCTT    426

BSNT_00757___    430 TCACTAAAAACATTACAGGATATCGCAGTCGCATACGGCTATGACCCAAA    479
                     ||..||||.|||||.|||||.|||||.||..|.||||||||.||.||.||
BL02923___ydb    427 TCTTTAAAGACATTGCAGGACATCGCGGTATCTTACGGCTACGATCCTAA    476

BSNT_00757___    480 GGAGAAAAAA--GAACGCGTCTTCATTGTGAAATGCCTGCAGCTGA-CGT    526
                       ||||||||  ||.||..|.||.|||.|.|||||.||||||||.| || 
BL02923___ydb    477 --AGAAAAAACGGAGCGGATGTTTATTATTAAATGTCTGCAGCTCAGCG-    523

BSNT_00757___    527 CGGCTGATGTTGTCGGCAAAAGATCGATTTTGCAGGAATTAAAACACTAC    576
                     |.||||||.|||||||.|||||..||||..|.||||||.|.|..|..|||
BL02923___ydb    524 CTGCTGATATTGTCGGGAAAAGGGCGATCATTCAGGAACTCAGCCGATAC    573

BSNT_00757___    577 GATCAA---------GACCGTACATATAAGAATGTCGCTTCTCAAATCCA    617
                     .|||||         ..||||..|.|||.||      .|||.|||||.||
BL02923___ydb    574 CATCAACCATCAGGCTCCCGTGAAAATATGA------TTTCGCAAATTCA    617

BSNT_00757___    618 AGGCTGGCGAGAAGTCGTTTTGGGCTATCGAGACACGTTTGGCTGGAAAA    667
                     |||||||||.|||||.||||.....||.||.||..|.||.||.|||||||
BL02923___ydb    618 AGGCTGGCGGGAAGTTGTTTATACATACCGCGATTCTTTCGGATGGAAAA    667

BSNT_00757___    668 AACTTTTCCAGATGGTGCCGGTTGCCGGAATGGTTTTTGGCGC-CGCTGC    716
                     |.||.||.||.||||||||.||.||.|||||..|||||||.|| ..|| |
BL02923___ydb    668 AGCTGTTTCAAATGGTGCCAGTAGCAGGAATCCTTTTTGGTGCAATCT-C    716

BSNT_00757___    717 CAATCGCTCAACATTAAACGACATTACCGAGACAGGCATGATGCTGTACA    766
                     .|||||.||.|...|.||||...||.||||.|||||.||||||.||||.|
BL02923___ydb    717 AAATCGTTCGATGGTGAACGGTGTTGCCGAAACAGGGATGATGATGTATA    766

BSNT_00757___    767 AAAAGAGGCGCATTCTTGAACGACT---------------GAAAGAAACA    801
                     |||||.|||||||..|.|||.|.||               ||.|||||||
BL02923___ydb    767 AAAAGCGGCGCATCATGGAAAGGCTTGCGGAGCTGGACGCGACAGAAACA    816

BSNT_00757___    802 GAACGAGAGATGGAATAG    819
                         |||.|||  ||   
BL02923___ydb    817 ----GAGGGAT--AA---    825


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00757 and BL02923

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
