Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03161 and BL02924
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_03161___yojK.1.5803.seq
# -bsequence dna-align/BL02924___yojK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03161___yojK-BL02924___yojK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03161___yojK-BL02924___yojK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03161___yojK
# 2: BL02924___yojK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1315
# Identity: 798/1315 (60.7%)
# Similarity: 798/1315 (60.7%)
# Gaps: 227/1315 (17.3%)
# Score: 2158.5
#
#
#=======================================
BSNT_03161___ 1 ATGGCAAATGTATTAATGATCGGTTTCCCCGGTGAAGGGCATATTAATCC 50
||||.|.|||||.|.|||||...||||||.||.||||||||.||.|||||
BL02924___yoj 1 ATGGGACATGTACTGATGATTAATTTCCCGGGGGAAGGGCACATCAATCC 50
BSNT_03161___ 51 CTCTATCGGTGTGATGAAGGAGCTGAAATCTCGGGGAGAAAACATTACG- 99
.||||||||.||.|..|||||||||.||...||.||.||||.||| ||
BL02924___yoj 51 TTCTATCGGCGTCACAAAGGAGCTGCAAAGGCGAGGGGAAAGCAT--CGT 98
BSNT_03161___ 100 -TACTACGCAGTGAAGGAATATAAAGAAAAAATCACA-------GCTCTT 141
||.||.|||||..|||||||....||||||||.|.| ||.|
BL02924___yoj 99 ATATTATGCAGTTGAGGAATACGCTGAAAAAATTAAAAAAACAGGCGC-- 146
BSNT_03161___ 142 GATATAGAGTTTCGTGAGTATCATGATTTCAGGGGAGATTACT-TCGGGA 190
|||..|.|||...||.|..||||||| |.|||.|| || ||
BL02924___yoj 147 -----AGAAGTCCGTTTATACCCGGATTTCA-GAGAGGTT-CTATC---- 185
BSNT_03161___ 191 AAAACGCAACCGGTGATGAAGAAAGA-------GACTTTACTGAAATGAT 233
|||.|.||.|||.||||| ||||||.|.|||
BL02924___yoj 186 --------ACCCGGGAAGAAAAAAGAAAAGATGGACTTTGCCGAA----- 222
BSNT_03161___ 234 CTGCGCTTT----TTTGAAAAGCTGTAAAGATATTGCGACTCAT------ 273
|.|.||| |.||..|| ||||||..|.||.|| ||.|
BL02924___yoj 223 --GTGGTTTACAATATGTCAA---GTAAAGTCAATGAGA-TCGTTCAGTT 266
BSNT_03161___ 274 -ATTTATGAGGAAGTCAAACATGAATCGTATGATTATGTCATATATGATC 322
||.||...|||||||||...||||||.|||||||||||.||||||||.|
BL02924___yoj 267 CATCTACCGGGAAGTCAAGAGTGAATCTTATGATTATGTGATATATGACC 316
BSNT_03161___ 323 ACCATCTTC-TCGCGGGTAAAGTCATCGCCAACCTGCTGAAGCTGCCAAG 371
|.|| |||| |.|||||.|||.|.||.||..|..||||..|||||||.||
BL02924___yoj 317 ATCA-CTTCTTAGCGGGGAAAATTATTGCTGAAATGCTTGAGCTGCCGAG 365
BSNT_03161___ 372 ATTTTCATTGTGTACAACCTTTGCGATGAATGAGGAATTTGCGAAGGAAA 421
..||||.||.||.||.||.|||||.|||.|.|||.|.|||||.| |||
BL02924___yoj 366 CGTTTCGTTATGCACGACATTTGCAATGGACGAGCAGTTTGCAA---AAA 412
BSNT_03161___ 422 TGATGGGAGCGTA-CATGAAAGGATCACTTGAAGATTCGCCTCATTATGA 470
.|.| || |..|.||||....||||||...||||||.|||.|||
BL02924___yoj 413 CGTT-------TACCCCGCAAGGCGACCTTGAAAGCTCGCCTTATTTTGA 455
BSNT_03161___ 471 ATCATACCAGCAG-----CTTGCAGAAACTTTAA---------ATGCTGA 506
|..||...| || ||.|..||| |||| ||.|||
BL02924___yoj 456 AAAATTGAA--AGGATCCCTCGGCGAA---TTAAGTGAGCGGTATCCTG- 499
BSNT_03161___ 507 TTTTCAAGCAGAGATCAAGAAGCCATTTGATGTTTTTTTAGCTGAT---G 553
|||..| ||.|.|||||.|||||.||.||.| .||| | |
BL02924___yoj 500 ---TCAGTC-----TCGACAAGCCGTTTGACGTATTCT--CCTG-TCCGG 538
BSNT_03161___ 554 GTGACTTGACAATTGTCTTTACATCAAGGGGATTTCAGCCACTGGCTGAG 603
|.||..|.||.|||||||||||.||.||.|..||||||||.|..||.||.
BL02924___yoj 539 GGGATATCACGATTGTCTTTACTTCCAGAGCGTTTCAGCCTCATGCCGAA 588
BSNT_03161___ 604 CAATTTGGCGAGCGA-TATGTATTTGTCGGTCCTTCCATTACAGA----- 647
|.|||||| .||.|| |||.|.|||||.||.||.||.|||.| ||
BL02924___yoj 589 CGATTTGG-AAGTGACTATTTGTTTGTAGGGCCGTCGATTGC-GAGCAGG 636
BSNT_03161___ 648 -AAGAGCC-GGAAACAATGATTTCCCATTTGATCAGATTGACAATGAAAA 695
|.||.|| ||||.| |||||.||.|...||.|.||....||||.
BL02924___yoj 637 CAGGATCCGGGAAGC------TTCCCGTTCGCCGAGCTGGAGGGGGAAAC 680
BSNT_03161___ 696 CGTGCTGTTTATTTCAATGGGAACCATTTTTAATAATCAAAAGCAGTTTT 745
|||..|..|.||.||.|||||.||.||.||||||.|.|||||..||.|.|
BL02924___yoj 681 CGTCATCGTGATCTCGATGGGCACGATCTTTAATCAGCAAAAAGAGCTGT 730
BSNT_03161___ 746 TTAATCAATGCCTTGAAGTG-TGTAAGGATTTTGACGGTAAAGTTGTGCT 794
.|.||...||..|.||||.| || ||.||.||||||||.||.||.||..|
BL02924___yoj 731 ATCATATGTGTATCGAAGCGCTG-AAAGACTTTGACGGCAAGGTGGTCAT 779
BSNT_03161___ 795 TTCCATCGGCAAGCATATTA----AAACAAGTGAGTTAAACGACATTCCG 840
.||..||||.|| ||.| |..|.||.||..|...|..|||.|||
BL02924___yoj 780 GTCTGTCGGGAA----ATCAACGGATCCTAGGGATCTCGGCAGCATACCG 825
BSNT_03161___ 841 GAGAATTTCATTGTACGCCCGTATGTCCCTCAGCTTGAGATCTTGAAAAG 890
||..||||.||.||..|.||||||.||||.||..|.|||.|.||||||
BL02924___yoj 826 GATCATTTTATCGTGAGGCCGTATATCCCGCAATTGGAGGTTTTGAAA-- 873
BSNT_03161___ 891 AGCCAGCT----TATTTGTGACACACGGCGGAATGAACAGCACAAGTGAA 936
|.|||| |||||||.|||||||||||.||||||||.||||.||||
BL02924___yoj 874 --CAAGCTGATGTATTTGTCACACACGGCGGTATGAACAGTACAAATGAA 921
BSNT_03161___ 937 GGTTTGTATTTTGAAACCCCGCTCGTTGTCATTCCGATGGGAGGC-GACC 985
||..|.||.|||||.||.||||||.|.|||||.|||||||| ||| ||||
BL02924___yoj 922 GGCCTTTACTTTGATACACCGCTCATCGTCATCCCGATGGG-GGCAGACC 970
BSNT_03161___ 986 AATTTGTTGTCGCAGATCAGGTGGAA---AAAGTCGGTGCAGGAA--AAG 1030
|.|||.|.|||||.|||||||||||| |.| ||.||.||.| |||
BL02924___yoj 971 AGTTTTTCGTCGCTGATCAGGTGGAACGTACA---GGCGCCGGGATCAAG 1017
BSNT_03161___ 1031 -TGTTAAAAAAAGAAGAATTATCTGAAAGCCTGCTG------AAAGAGAC 1073
|| .|.|||.|.|||.|.|| .||.|||| ||| |.||
BL02924___yoj 1018 CTG---GACAAAAATGAACTTTC-----CCCGGCTGTTTTACAAA-AAAC 1058
BSNT_03161___ 1074 GATACAAGAAGTA---ATGAATAATCGTTCGTATGCTGAAAAG------- 1113
|||..|||| || .|||| ||.||.||.||| ||||
BL02924___yoj 1059 GATTAAAGA--TATGCTTGAA-AACCGCTCCTAT-----AAAGACGACGC 1100
BSNT_03161___ 1114 -GCAAAAGAAATTGGACAATCACT--GAAAGCGGCAGGCGGCTCTAAAAA 1160
||.| ||||.||.|..||.|| |.|| .||.|||||||.|.||||
BL02924___yoj 1101 CGCCA---AAATCGGCCGCTCGCTCCGCAA--TGCCGGCGGCTATCAAAA 1145
BSNT_03161___ 1161 AGCGGCCGATAGCATTCTTGAAGCTG-------TAAAACAAAAAACTCAA 1203
|||.||.||| ||..|.|||.||.|| .|||..||
BL02924___yoj 1146 AGCAGCGGAT-GCCGTATTGGAGTTGGCGGGGAGAAAGTAA--------- 1185
BSNT_03161___ 1204 TCAGCAAATGCATAG 1218
BL02924___yoj 1185 --------------- 1185
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