Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01089 and BL02927

See Amino acid alignment / Visit BSNT_01089 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_01089.1.5803.seq
#    -bsequence dna-align/BL02927___yebA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01089-BL02927___yebA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01089-BL02927___yebA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01089
# 2: BL02927___yebA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2482
# Identity:    1485/2482 (59.8%)
# Similarity:  1485/2482 (59.8%)
# Gaps:         527/2482 (21.2%)
# Score: 3992.5
# 
#
#=======================================

BSNT_01089         1 ATG-CCGCACGATGATCACAAGGGAAGCCGTTTGAGCTTGCTGTTATTTT     49
                     .|| |||...||       ||..|||.|.|.||..|.||..||.|.||||
BL02927___yeb      1 TTGTCCGGGGGA-------AAAAGAAACAGGTTCGGTTTATTGCTTTTTT     43

BSNT_01089        50 ATTTTCTGGCTTTTTTATTGCTGTGGGAGTGGCTCAGGCCGCTTGACAG-     98
                     ||.|.|||.|||||||..|||||||||||||||||.|.|  |||..||| 
BL02927___yeb     44 ATGTGCTGACTTTTTTGCTGCTGTGGGAGTGGCTCCGTC--CTTTGCAGT     91

BSNT_01089        99 -TTTTACTGAAACGAAACATACAGGCTTTTTTAGTGTCTTTATCGGT-TT    146
                      ||||||.||.|||...||.||.|.||||||||.|.|.|||||||.| ||
BL02927___yeb     92 ATTTTACCGATACGGGGCACACCGTCTTTTTTATTTTATTTATCGCTCTT    141

BSNT_01089       147 G-ACGTTTCTGCTGACTTTTTTCAGGATGAGG-----TGGTTTGTCA---    187
                     | |  |||.||||.||.|||||     |.|||     ||||||.|||   
BL02927___yeb    142 GTA--TTTTTGCTTACATTTTT-----TAAGGTCCCTTGGTTTATCAGAT    184

BSNT_01089       188 --CCGTT---CCTT---TTTGTGTCATATTTACATTGATCTCGATACACA    229
                       |||.|   ||||   ||.|| || |.|||.||.||         ||||
BL02927___yeb    185 TTCCGGTCAGCCTTGGCTTCGT-TC-TGTTTGCACTG---------CACA    223

BSNT_01089       230 TCCTGTTTTATCAAGGATC--TATATTCGACTTGAGCTGGGTCAGCTCT-    276
                     ...|.|||||..|||||||  |.|.|||..|||.|  |||.| .||.|| 
BL02927___yeb    224 CGATTTTTTACGAAGGATCGGTGTTTTCACCTTCA--TGGAT-TGCCCTG    270

BSNT_01089       277 TTTTTGCAGGATGTCTATCTGAATATCACGCT-GATTCAATCT-GGGCA-    323
                     |||||.||||||.|..|.|..|||.||.| || .|||  .||| .|||| 
BL02927___yeb    271 TTTTTCCAGGATTTAAAGCGAAATTTCTC-CTATATT--TTCTCCGGCAT    317

BSNT_01089       324 ATGGAATGACATGATTCCTTCATTTCGGACCCTGCTGTTTTTTGTGCTGC    373
                     .|||...||.|||...||.|..||||||||.|||||.||||..||.||.|
BL02927___yeb    318 GTGGCGGGATATGTCGCCGTTGTTTCGGACGCTGCTCTTTTACGTCCTTC    367

BSNT_01089       374 TGTGGCTGCTGGTCTATCTCCTGCATTATTGGGTGATTTACCAGAGAAGA    423
                     |.||||||||.||.||..|.|||||.||.||||||||.||.|||.|.|||
BL02927___yeb    368 TTTGGCTGCTCGTATACTTGCTGCACTACTGGGTGATCTATCAGCGCAGA    417

BSNT_01089       424 ATTTTGTTTTTCTTTTTGATGACAGTAGCGTATATTACGATTCTTGATAC    473
                     |||||.||.||.|||.|.|||||.||.|..|||.|..||.|..|.|||||
BL02927___yeb    418 ATTTTATTCTTTTTTATTATGACCGTTGTTTATGTCGCGGTGATCGATAC    467

BSNT_01089       474 CTTTACGCCATATGATGCCACTTTTGCCGTCATCCGTATCGTGCTGATCG    523
                     .||||||||.|.|||.||..|.|.|||..||.||.|.|||||||||||||
BL02927___yeb    468 ATTTACGCCGTTTGACGCGTCATATGCGATCGTCAGGATCGTGCTGATCG    517

BSNT_01089       524 GCTTCTTTATGCTGGGCCTTTTATACTTGGAACGCATTAAGCTGATGGAA    573
                     ||||.||..|.||.|||||..|.||.||||||||.||.|.|         
BL02927___yeb    518 GCTTTTTGCTTCTCGGCCTGCTGTATTTGGAACGGATCAGG---------    558

BSNT_01089       574 AGAATCA----CACTGCCAAAAACATCTGTCCT-GAAAT---GGTTTCTT    615
                      ||||||    |.||  ||||        |||| |||||   ||||  |.
BL02927___yeb    559 -GAATCAGAAGCGCT--CAAA--------TCCTCGAAATCGCGGTT--TG    595

BSNT_01089       616 CC------TTT------ATCTGTATTGGTTTTGGCTGCAACG-----GTA    648
                     ||      |||      .||| |||||   .||.||||  ||     ||.
BL02927___yeb    596 CCAAATGGTTTGCACCGCTCT-TATTG---ATGACTGC--CGCCGCCGTG    639

BSNT_01089       649 T---TCGGACTCGC---CGCTCCAAAATCAGAGCCGGCCTGGCCTGATCC    692
                     |   ||||   |||   |.|.||||||.|.||.||.|.||||||||||||
BL02927___yeb    640 TGCATCGG---CGCGGTCTCGCCAAAAGCCGATCCCGTCTGGCCTGATCC    686

BSNT_01089       693 GGTGCCTTTTCTTAAAAAAATCA-----CT-CATCAAGACC-GCGTGTCT    735
                     ||||||.|||||        .||     || |     |||| |||..|.|
BL02927___yeb    687 GGTGCCGTTTCT--------GCAGACGGCTGC-----GACCGGCGATTTT    723

BSNT_01089       736 G------CAGGGGAAAGCAAAATCGGATACGGGAATCATGATGAATCACT    779
                     |      ||||...|||||||.||||.||.||.|...|||||||..||.|
BL02927___yeb    724 GCTTCCTCAGGCAGAAGCAAAGTCGGCTATGGAACGAATGATGAGGCATT    773

BSNT_01089       780 CGGCGGCCC--GTTCCAGCAGGATGCTACACCTGTTTTTACATGGCAGGG    827
                     .|||||.||  .|||.|  |.||.|.||||...||.||||||||||||||
BL02927___yeb    774 GGGCGGTCCATTTTCAA--AAGACGATACATGGGTATTTACATGGCAGGG    821

BSNT_01089       828 AAAAGAGCGTACGTATTTCCGTGTGGAAACGAAGGACACG-TATACCGGA    876
                     |||.||.||.|..||||||.|.|||||||| ||..|..|| |||||.|||
BL02927___yeb    822 AAATGAACGAAGCTATTTCAGGGTGGAAAC-AAAAAGCCGCTATACAGGA    870

BSNT_01089       877 AAAGGCTGGATTGAA-ACAGACA---CAGGCATGTCGTATCAGCTTAGCA    922
                     ||||||||||||||| || ||.|   |||||...||...|||||||    
BL02927___yeb    871 AAAGGCTGGATTGAAGAC-GAAAAATCAGGCGCATCCATTCAGCTT----    915

BSNT_01089       923 ATGGAAAAGTTGA-AAATTTGTGGTTTGACCATAAGGT--TGCGACAGAG    969
                        |||.||  || |||   .|||.|| ||||    ||  |.|||| ||.
BL02927___yeb    916 ---GAAGAG--GATAAA---CTGGATT-ACCA----GTGGTACGAC-GAA    951

BSNT_01089       970 AGCCGT----ACCG-TCCGTGTAAA-----AGTCGATA---AGCAC---T   1003
                     || |||    |||| ..||.|.|||     .|||||||   |.|.|   |
BL02927___yeb    952 AG-CGTGAAGACCGAAACGCGCAAAGCGATCGTCGATATCGATCCCGCTT   1000

BSNT_01089      1004 ACGGGTATAACCATCTGATGTATCCGATTGGTGCG---GAAACCATTCAG   1050
                     ||.||||..|.|||.|..||||||||||.||..||   ||||.||   ||
BL02927___yeb   1001 ACCGGTACGATCATGTCCTGTATCCGATCGGGACGACCGAAATCA---AG   1047

BSNT_01089      1051 CCAAAGCAGGCTGTCT------CACTTGAAATGAACGGCAACACGGAGCA   1094
                     |..||..|   |.|||      |.||....||||||...||.||||||.|
BL02927___yeb   1048 CTCAATAA---TTTCTTTGTGCCGCTCCGCATGAACTTAAATACGGAGAA   1094

BSNT_01089      1095 AATTTCTCCGATCAGTGA-ACAAGC-CGGTGA-AATCAGAAATATGGGGA   1141
                     |||....|||..|.|..| |||.|| ||  || |.|||| |||.|||..|
BL02927___yeb   1095 AATAAAACCGGCCGGCAAGACAGGCGCG--GACATTCAG-AATCTGGAAA   1141

BSNT_01089      1142 ATTATACAGTAACGTACAATTCCCCGGTCTATAAGCTGGATGAACTGAGA   1191
                     ..|||.|.||.||.||.||.||.||.||||.|.|..|.|||.|.|||||.
BL02927___yeb   1142 GCTATTCGGTCACCTATAAATCACCCGTCTTTGATGTCGATCAGCTGAGG   1191

BSNT_01089      1192 AAGGTAA-----AAGT--GAGAAAAAA-----CAG------TGAGGAGTA   1223
                     ||.||.|     .|||  |||...|||     |||      ||||.||  
BL02927___yeb   1192 AAAGTCAGCTTGGAGTCGGAGGGGAAATGGGCCAGGAGCCATGAGAAG--   1239

BSNT_01089      1224 CACATTCAGCGATCGCTACATGCAGCTTCCAGATTCACTGCCAGAGCGGG   1273
                                     |||.||||||||||...|||.||.||.||.||.|
BL02927___yeb   1240 ----------------TACCTGCAGCTTCCCACTTCCCTTCCCGACCGCG   1273

BSNT_01089      1274 TGAGAACCCTTG-----CGATCAAACTGACTCAGGATCACGACAATATGT   1318
                     ||| ||.|.|||     ||||..||| ||   |.||..|.||.|||||.|
BL02927___yeb   1274 TGA-AAACATTGGCGCACGATTTAAC-GA---AAGACGAAGATAATATAT   1318

BSNT_01089      1319 TTGATAAGGTGAAAGCGGTTGAGGACTATTTAGGGTCAAATGCG--TTCA   1366
                     .|||.||.|.|||||||.|||||.|.|||.|.||.||  .|.||  ||..
BL02927___yeb   1319 ATGACAAAGCGAAAGCGATTGAGAAGTATCTCGGTTC--TTCCGAATTTT   1366

BSNT_01089      1367 CATATGAAACAGAAAACGTGACCATTCCTAA--GAATGATGAAGATTATG   1414
                     |.|||||.||.|||.|.||..|..|||||||  ||  ||..|.|||||.|
BL02927___yeb   1367 CTTATGAGACGGAAGATGTCGCTGTTCCTAAAGGA--GACCAGGATTACG   1414

BSNT_01089      1415 TCGATCAATTTCTCTTTGAAACGAAAATGGGTTATTGTGATAACTTTTCT   1464
                     |||||||.|||.|.|||||.||||||||.||.||.||.||.||.|||||.
BL02927___yeb   1415 TCGATCAGTTTTTATTTGAGACGAAAATCGGCTACTGCGACAATTTTTCC   1464

BSNT_01089      1465 TCCGCCATGGTGGTGCTCTTGCGCTCGGCCGGCATTCCGGCCCGCTGGGT   1514
                     .|.||.|||.|.||.||..||||.||||||||.||.||||||||||||||
BL02927___yeb   1465 ACGGCTATGATCGTACTGCTGCGGTCGGCCGGAATACCGGCCCGCTGGGT   1514

BSNT_01089      1515 AAAGGGTTATACGTCCGGCGAATA--CAAAGAA-----GCA----GGAAA   1553
                     .||.||.||.||.|||||.|||||  | |.|||     |||    |||||
BL02927___yeb   1515 GAAAGGCTACACATCCGGTGAATATGC-AGGAACGACGGCAGACCGGAAA   1563

BSNT_01089      1554 CAAAAATGGCAGCATCTACGAAGTGACAAATAACAATGCCCATTCCTGGG   1603
                     |       |||..||.|||||.||||||||.|||||||||||.|||||||
BL02927___yeb   1564 C-------GCACGATGTACGAGGTGACAAACAACAATGCCCACTCCTGGG   1606

BSNT_01089      1604 TAGAGGTGTATTTCCCGGAACAGGGCTGGGTTACATTTGAGCCGACTAAA   1653
                     |.||.||||||||....|.|||.|||||||||||.|||||.|||||.|||
BL02927___yeb   1607 TTGAAGTGTATTTTGAAGGACAAGGCTGGGTTACGTTTGAACCGACGAAA   1656

BSNT_01089      1654 GGGTTTACAAATCC---------GGCTGAATTTACTTCTTCTGACACAAA   1694
                     ||.|||..||||||         .|.||||                    
BL02927___yeb   1657 GGCTTTTTAAATCCCGAGCAGCTCGTTGAA--------------------   1686

BSNT_01089      1695 GGACTCCGGCAGCGATAAAAGCAGCTCGCCG--------------AAGAA   1730
                      ||.||   |||||.|     ||||..||||              ||.||
BL02927___yeb   1687 -GAGTC---CAGCGGT-----CAGCAAGCCGGCGCGGCTTCTGATAAAAA   1727

BSNT_01089      1731 AGCAAAAGA-GAAACAGAAAGAAGAGAAAAAACAG---CCGCA------A   1770
                     ||   |||| ||.| |||||.|.||..||...|||   |||||      |
BL02927___yeb   1728 AG---AAGATGATA-AGAAAAATGATGAAGGCCAGCGTCCGCAGGATGCA   1773

BSNT_01089      1771 AAAGAGGA--AAAACAAA----------------AGGAAAAGCGGGA-GC   1801
                     |||||..|  |.||||||                |||.||||||.|| ||
BL02927___yeb   1774 AAAGAACAAGACAACAAAGAGAAGCCCGAATCCCAGGCAAAGCGTGATGC   1823

BSNT_01089      1802 CAGCTGTTTCTAAAAAGCCGTCCGCTTCGCATACTAATGCCGG-TGCGGG   1850
                     |            |||||||          ||.|..||||||| .|||  
BL02927___yeb   1824 C------------AAAGCCG----------ATTCCCATGCCGGAAGCG--   1849

BSNT_01089      1851 CTTGTATGCAGCGCTTGCGGTTCTTGCAGTCCTCT------TGGTGGCAG   1894
                      .|| ||||||              .|.||.||||      |||| ||.|
BL02927___yeb   1850 -ATG-ATGCAG--------------ACCGTACTCTTTTGACTGGT-GCGG   1882

BSNT_01089      1895 CTGTATTGCTGTATGTTTTCCGCT--CGTTATGGATTCCTGTTTT-----   1937
                     |.|||.| |.||.||||    |||  |||| ||.|....||.|||     
BL02927___yeb   1883 CCGTACT-CGGTCTGTT----GCTGGCGTT-TGCAGCGGTGCTTTACTAT   1926

BSNT_01089      1938 -CACCGTGAG---GAAATTGAAGCGGCGCA--ACGATCAGCACGC-----   1976
                      ||     ||   |||||.||.||.||.||  |..||||.||.||     
BL02927___yeb   1927 ACA-----AGGGTGAAATGGATGCCGCACATCATCATCAACAGGCTGAAA   1971

BSNT_01089      1977 ------------------GTTT--TTTGAGGCATATGACGCGCTTCTGAA   2006
                                       ||||  |||.|.||.||.||||..||.||...
BL02927___yeb   1972 AAACGGCGTGATGAAGCGGTTTTCTTTAAAGCCTACGACGAACTGCTCCG   2021

BSNT_01089      2007 ACAACTGAAGAGAAAAGGGCTGCCGAAACGAGGCAGTG--AAACGCTGCG   2054
                     .||.||||||.|..||||..|| |.|||.||.|.|| |  |.||||||||
BL02927___yeb   2022 CCAGCTGAAGCGCCAAGGCATG-CAAAAAGAAGAAG-GCCAGACGCTGCG   2069

BSNT_01089      2055 TGATTATGC-AAAACGAATTGATGAAAAATACGACATAGAAGACATGTCA   2103
                     .||.|.||| ||.||| .|||||||     |||           .|.|||
BL02927___yeb   2070 CGAGTTTGCGAAGACG-GTTGATGA-----ACG-----------CTTTCA   2102

BSNT_01089      2104 AAGC--TGACATTAAG--------------CTATGAAAGGGCGCTTTACA   2137
                     ||||  .|||||.|.|              .||||||.||||..|.||..
BL02927___yeb   2103 AAGCGGGGACATGACGGCTTTGACTCTTCAATATGAACGGGCTTTGTATC   2152

BSNT_01089      2138 GAAATGAAGATTCTTCGGCGCTA-----TGGAATGATTCGAGAGAGTTAT   2182
                     ||||.|||||     ||.|||||     ||||||||||||...|||||||
BL02927___yeb   2153 GAAAGGAAGA-----CGCCGCTAAGCTTTGGAATGATTCGGCGGAGTTAT   2197

BSNT_01089      2183 GGGAAAATTTAATTAAAAGAAGATGGTCTTGA   2214
                     ||||||||||||||||||..||||.|      
BL02927___yeb   2198 GGGAAAATTTAATTAAAAAGAGATAG------   2223


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