Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02969 and BL02939

See Amino acid alignment / Visit BSNT_02969 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_02969___yneJ.1.5803.seq
#    -bsequence dna-align/BL02939___ccdC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02969___yneJ-BL02939___ccdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02969___yneJ-BL02939___ccdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02969___yneJ
# 2: BL02939___ccdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 493
# Identity:     363/493 (73.6%)
# Similarity:   363/493 (73.6%)
# Gaps:          17/493 ( 3.4%)
# Score: 1288.0
# 
#
#=======================================

BSNT_02969___      1 ATGATGATTATAGTTTCATCGATTATTGCTGTGTTAATGGCTGTAGCTGT     50
                     ||||||||..|.||||||||.||..|||||.|..|.|||||.||...|||
BL02939___ccd      1 ATGATGATCGTCGTTTCATCTATACTTGCTATCGTGATGGCCGTCATTGT     50

BSNT_02969___     51 GATGGTGGTCAGAATAAAGTCCTCTGACAAGCCTGTTTCACCAAAAAAAA    100
                     .||||..||||||||.|||||.|||||.||.||.|.|.|..|.|||||||
BL02939___ccd     51 CATGGCTGTCAGAATCAAGTCATCTGAAAAACCGGCTACGGCCAAAAAAA    100

BSNT_02969___    101 TCATTCTTCCGCCGATTTTTATGAGTACGGGAGCGTTAATGTTTTTATTT    150
                     |.||.||.||.||||||||||||||.||.||.||..|.||||||||||||
BL02939___ccd    101 TTATACTGCCTCCGATTTTTATGAGCACCGGTGCTCTCATGTTTTTATTT    150

BSNT_02969___    151 CCGGTATTTTGGGTAACTGGAGCAGAGTTTTTGGAAGCATTCACTTTAGG    200
                     |||||.||....|||||.||.||.||.|||||||||||..||||..|.||
BL02939___ccd    151 CCGGTGTTCCACGTAACCGGTGCTGAATTTTTGGAAGCTCTCACCGTGGG    200

BSNT_02969___    201 TGTGATTTTCTCTATTTTTCTAATCAAAACTTCTAAGTTCGAAATTAAAA    250
                     ..||||.||.||||||||..||||.|||||.||.||.||.|||||.....
BL02939___ccd    201 CATGATCTTTTCTATTTTCTTAATTAAAACCTCAAAATTTGAAATCCGCG    250

BSNT_02969___    251 ATAATGAAATTTACATGAAACGCTCTAAAGCATTTGTTTTTATATTAGTC    300
                     ||.||.||||.||.||.|||||.||.|||.|.|||||.|||||.|||.|.
BL02939___ccd    251 ATGATAAAATCTATATTAAACGGTCCAAATCGTTTGTGTTTATTTTAATT    300

BSNT_02969___    301 GGTCTTTTGGTGATCAGAATCGTGATGAA-ATCGATCTTGAGCACATCAA    349
                     |..||..|.||.|||.|.||||||||||| |.| ||.||.||||||.|.|
BL02939___ccd    301 GCGCTGCTCGTCATCCGGATCGTGATGAAGAGC-ATATTAAGCACAACGA    349

BSNT_02969___    350 TTGATTATGGTGCACTGAGCGGAATGTTTTGGATTCTGGCTTTCGGTATG    399
                     |.|||||.||.|||||||||||||||||||||||||||||||||||.|||
BL02939___ccd    350 TCGATTACGGCGCACTGAGCGGAATGTTTTGGATTCTGGCTTTCGGGATG    399

BSNT_02969___    400 ATTGTGCCTTGGAGAATCGCCATGTATTTATCATATCGAAAAC-TTCATA    448
                     ||.||.||||||.|.||.||||||||||||||.|.|.||||.| ||||  
BL02939___ccd    400 ATCGTTCCTTGGCGGATTGCCATGTATTTATCGTTTAGAAAGCTTTCA--    447

BSNT_02969___    449 ACGAGC-----TGCAGTCATCTAAT---ATTCAAATGAATTAA    483
                        |||     ||.|| |.||.|||   ||.||..|.||||||
BL02939___ccd    448 ---AGCCAGATTGAAG-CGTCAAATCACATACAGGTCAATTAA    486


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