Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02989 and BL02954

See Amino acid alignment / Visit BSNT_02989 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:41
# Commandline: needle
#    -asequence dna-align/BSNT_02989___yneS.1.5803.seq
#    -bsequence dna-align/BL02954___yneS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02989___yneS-BL02954___yneS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02989___yneS-BL02954___yneS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02989___yneS
# 2: BL02954___yneS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 622
# Identity:     415/622 (66.7%)
# Similarity:   415/622 (66.7%)
# Gaps:          68/622 (10.9%)
# Score: 1355.5
# 
#
#=======================================

BSNT_02989___      1 ATGTTAATTGCTTTATTGATTATTTTGGCCTACTTGATAGGCAGCATTCC     50
                     ||||||||.||||||||..|||||||.|||||..|..|.|||||||||||
BL02954___yne      1 ATGTTAATAGCTTTATTATTTATTTTAGCCTATCTACTCGGCAGCATTCC     50

BSNT_02989___     51 GTCTGGCTTAATTGTGGGCAAGCTTGCCAAGGGAATTGATATTCGGGAGC    100
                     |||.|||||.|||||.||.|||...|||||.|||||.||.||..||||.|
BL02954___yne     51 GTCCGGCTTGATTGTCGGAAAGGCCGCCAAAGGAATCGACATCAGGGAAC    100

BSNT_02989___    101 ACGGAAGCGGCAA-CTTAGGCGCTACCAATGCATTCCGTACATTGGGTGT    149
                     ||||.|||||.|| ||| |||||.|||||.|||||.||.|||.|.||.||
BL02954___yne    101 ACGGCAGCGGGAATCTT-GGCGCCACCAACGCATTTCGGACACTCGGCGT    149

BSNT_02989___    150 AAAAGCTGGTTCGGTCGTCATAGCCGGAGATATTTTGAAAGGGACACTGG    199
                     ||||||.||.||..||||..|.||.|..||.||||||||||||||.||.|
BL02954___yne    150 AAAAGCCGGCTCTATCGTTGTGGCTGCGGACATTTTGAAAGGGACGCTCG    199

BSNT_02989___    200 CAACTGCATTGCCTTTTC---------TCATGCATGTTGATATTCACCCG    240
                     |        .||| ||||         ||.||||..|.|...|.|||||.
BL02954___yne    200 C--------CGCC-TTTCTGCCCGCCATCCTGCACATCGGCGTACACCCT    240

BSNT_02989___    241 CTTCTTGCAGGAGTCTTTGCGGTTTTAGGCCACGTGTTTCCCATCTTCGC    290
                     .|.||.||.||.||....||.||..|.||.||..||||.||..|.|||||
BL02954___yne    241 TTGCTGGCCGGCGTAGCCGCAGTCATCGGGCATATGTTCCCTGTGTTCGC    290

BSNT_02989___    291 CAAATTTAAAGGCGGTAAAGCCGTGGCGACATCAGGAGGCGT-----TTT    335
                     .||||||||||||||.|||||.||.||.||.||.||||||||     |||
BL02954___yne    291 AAAATTTAAAGGCGGAAAAGCTGTCGCTACTTCCGGAGGCGTATTGCTTT    340

BSNT_02989___    336 GCTATTTTACGCA-CCCCTGTTATTTATCACGATGGTTGCGGTATTCTTC    384
                     |||||      || ||.||..|.|||.||||.|||||||||||.|||||.
BL02954___yne    341 GCTAT------CAGCCTCTTCTGTTTCTCACAATGGTTGCGGTGTTCTTT    384

BSNT_02989___    385 ATCTTTTTATACTTGACTAAATTTGTTTCTCTCTCATCGATGTTAACAGG    434
                     .|.|||||.||..|.||.||||.|||.||.||.||.||.||.|||||.||
BL02954___yne    385 CTGTTTTTGTATATCACAAAATATGTATCGCTTTCTTCCATTTTAACCGG    434

BSNT_02989___    435 GATCTAT---ACTGTTATATATAGTTTCTTTGTCCATGATACGTA-----    476
                     ..|.|||   ||.|||   ||.|||.|.||         ||||.|     
BL02954___yne    435 CTTGTATACAACGGTT---TACAGTCTGTT---------TACGAAAGACC    472

BSNT_02989___    477 -TTTATTGAT---TGTCGTTACCCTGCTCACTATTTTTGTGATATACAGA    522
                      |||||||.|   .|||||..||.|.||.||....|||||..||||||||
BL02954___yne    473 TTTTATTGGTGGCAGTCGTCGCCTTTCTTACGGCGTTTGTCGTATACAGA    522

BSNT_02989___    523 CACCGAGCGAACATTAAACGAATTATCAATAAAACAGAACCTAAAGTAAA    572
                     |||.|..|||||||||||||.||.|||.|||||||.||.||.|||.|.||
BL02954___yne    523 CACAGGACGAACATTAAACGCATCATCGATAAAACCGAGCCCAAAATCAA    572

BSNT_02989___    573 ATGGTTAT-----AA-------    582
                     .|||.|.|     ||       
BL02954___yne    573 GTGGATGTCCGGCAAAAGATGA    594


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