Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02450 and BL02966

See Amino acid alignment / Visit BSNT_02450 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_02450___ylaA.1.5803.seq
#    -bsequence dna-align/BL02966___ylaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02450___ylaA-BL02966___ylaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02450___ylaA-BL02966___ylaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02450___ylaA
# 2: BL02966___ylaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2272
# Identity:    1187/2272 (52.2%)
# Similarity:  1187/2272 (52.2%)
# Gaps:         689/2272 (30.3%)
# Score: 2469.0
# 
#
#=======================================

BSNT_02450___      1 TTG---GAGTTATTCAGTCATTATGTATTGCATTTCGAACGTTATTTTAT     47
                     |||   ||..||||.|||.|||||||..|.|||||.||||||||||||.|
BL02966___yla      1 TTGATCGAACTATTTAGTGATTATGTGCTCCATTTTGAACGTTATTTTGT     50

BSNT_02450___     48 ATTAAGCAGACAAAGCACCCTGCTGATTCAATGGTCAATTGTTGTTCTGG     97
                     .|||||||||||.||||..||..|.|||||.||||         .|.||.
BL02966___yla     51 TTTAAGCAGACAGAGCATGCTTGTCATTCAGTGGT---------GTGTGA     91

BSNT_02450___     98 C-GGGCTTATATCTTTTG------GTG-CA--TCATCCCAAAATAAACCT    137
                     | ||.|||.| .||||||      ||| ||  ||||||.|||.|    .|
BL02966___yla     92 CAGGCCTTGT-CCTTTTGTATGCCGTGTCATTTCATCCAAAAGT----GT    136

BSNT_02450___    138 GCAGCGCACAATGTTCTTGGCGGGTGTTATGT--TGC--GGATTGT----    179
                     |||| ||           ||||..|.||.|.|  |||  |.||.||    
BL02966___yla    137 GCAG-GC-----------GGCGCCTCTTTTTTTATGCAGGCATCGTTCTC    174

BSNT_02450___    180 --GCTG---CTGGCGGGAG---TGTCTGTTGAACTTATTCACCAGGTGCA    221
                       ||||   ||||..||.|   |.||..|||||.|...||||||..||.|
BL02966___yla    175 AGGCTGATACTGGTTGGCGCCCTTTCGTTTGAATTGGCTCACCAAATGAA    224

BSNT_02450___    222 A------------TCAACAAACTTCACCAGCGCTTACTTAAGAGAGGACG    259
                     |            ||||        |||.|    |||.||      ||||
BL02966___yla    225 AGCCGCTGAGTTTTCAA--------ACCTG----TACATA------GACG    256

BSNT_02450___    260 GAAAAGA---ACTGTTGCCGCTGCTGCATTTTTTGTTATACGGATATGTG    306
                     .|.||||   .||..||||..|..||||.||||||.|.|.|||.|||.|.
BL02966___yla    257 AACAAGATGCGCTTCTGCCTTTTATGCAGTTTTTGCTGTTCGGCTATATT    306

BSNT_02450___    307 CTGC-TGACGGCTTTTCACTATATGTTGATGC-CGCGTGATCATGGCGGA    354
                     .||| ||.| .|||||||.||||||.|||..| |||| ||..|.||.||.
BL02966___yla    307 TTGCTTGTC-TCTTTTCATTATATGATGACACTCGCG-GAAAAAGGGGGC    354

BSNT_02450___    355 AAGGGTAAGTTTTATACGTTCGACCTTGC--------CGTTGTCAGTTTG    396
                     |||||...|||||.|.|.||.|||.||||        ||.||.|..|||.
BL02966___yla    355 AAGGGGCTGTTTTTTGCATTTGACATTGCGGTGATGGCGATGCCGCTTTT    404

BSNT_02450___    397 CCAATCGTACAAATGATATTCAGTTTCTTT---ACGTATTGGAAGGAAAA    443
                     ||||||        |.|.|||||   ||||   .|.||||.|||||  ||
BL02966___yla    405 CCAATC--------GCTGTTCAG---CTTTGCCGCCTATTTGAAGG--AA    441

BSNT_02450___    444 TCCGGA-TGGAGTCGAGCCAGTTGCATT--CG-TGTTTCTGTTTTTCATT    489
                     |..||| .||||  ||||..|..|.|||  || |..|||||||.||.|||
BL02966___yla    442 TTTGGAGCGGAG--GAGCTTGAAGAATTGCCGCTCGTTCTGTTGTTGATT    489

BSNT_02450___    490 -----ATTACTCTTTCTATTG----TGTTGA-ATG-TTGTGTTTTTCAAG    528
                          |.|||         .|    ||.||| .|| |||| |||||| ||
BL02966___yla    490 GTCGGAATAC---------CGGGACTGATGATCTGCTTGT-TTTTTC-AG    528

BSNT_02450___    529 CTGTATTGGAGAACAAA----TAAG-----ATTTTACTAGGCTTATTTTA    569
                     ||.|||||||.||.|||    ||.|     .||||     |.|| |||||
BL02966___yla    529 CTTTATTGGAAAAGAAACCGTTACGTTCTCCTTTT-----GATT-TTTTA    572

BSNT_02450___    570 TACGCTGATTATCGGACTGCTTGTCTTGCTGCTTGCGCCATATCCCAATC    619
                     ||...|||..||||| |.|.||         |||            .|||
BL02966___yla    573 TATTGTGACGATCGG-CGGTTT---------CTT------------CATC    600

BSNT_02450___    620 AAATCTCAAAAGATTATGGTGCAGTAATGCCATATACGATTTATT-----    664
                     |      |||||.|  |||              ||||||.||.||     
BL02966___yla    601 A------AAAAGCT--TGG--------------ATACGAATTTTTTCCGC    628

BSNT_02450___    665 ------------TGGCAATGGCGGGATTTTTGATGAGCTATCATCTGTTC    702
                                 ||.|||||...||.|||.|.||||..|||||..||.|.
BL02966___yla    629 TGAACGTATTTCTGACAATGATCGGTTTTCTTATGACATATCACTTGCTG    678

BSNT_02450___    703 CAAAAGTCAGGAAAG-----GTTTATGTGCGTGTGAATAAGTGGGT----    743
                     .|..|.||..|||||     |||.|||     |||   |||.|.||    
BL02966___yla    679 AATGACTCGAGAAAGCCTTTGTTGATG-----GTG---AAGCGTGTTTTA    720

BSNT_02450___    744 GACGATGG--CTGTCATGGTGTTTTTTGTCCTGCTGT----TAAATCCGA    787
                     |.||..||  |.|.|     ||.|||| ||..||| |    |.|||||..
BL02966___yla    721 GCCGCGGGCACCGCC-----GTATTTT-TCACGCT-TCACCTCAATCCTT    763

BSNT_02450___    788 TATATAACATAGGAACG---GCTGCTTTCGCTGTATCAAAACCGATAAAT    834
                     |.||.||..|.|   ||   ||.|||||..|..|.|||.|.||| .|..|
BL02966___yla    764 TTTACAATTTGG---CGGATGCCGCTTTTACAATCTCACACCCG-GAGGT    809

BSNT_02450___    835 GTC---CATGATTCAT-TCAATTATGTCGGGGAGCACATTTCATCAG---    877
                     .||   |.||.||.|| .||||  |.|||    ||...||||    |   
BL02966___yla    810 TTCAGACGTGGTTGATGCCAAT--TTTCG----GCCTGTTTC----GGTT    849

BSNT_02450___    878 -AAAAAGCGGAACAGATACTAAAGTCA-----TTTTTTCCTACGGATGAA    921
                      ||.|||||.|.|||  |||   ||||     ||||||||.||.|| || 
BL02966___yla    850 AAAGAAGCGAAGCAG--ACT---GTCAGCTCGTTTTTTCCGACAGA-GA-    892

BSNT_02450___    922 ACACTT----TATTTG-CACGATACAAACATGGATGTGCATTATTTCTAC    966
                       .|||    |||||| || |.|||.|||..||||.|.|||.|..|.|| 
BL02966___yla    893 --GCTTTATCTATTTGTCA-GCTACCAACCAGGATTTTCATAACGTTTA-    938

BSNT_02450___    967 TCATTTGAAA--GCAAGAGTTATAAAGCTGAGGTAGATGAAGTATCGCAG   1014
                     ||||||.|||  |.|||| |||..|.||.||.||.||          |.|
BL02966___yla    939 TCATTTCAAAACGAAAGA-TTACGATGCGGACGTTGA----------CGG    977

BSNT_02450___   1015 CTGATTCGTAATTATGAATACTTA-------CAAAAAGCGCAT---GGGA   1054
                     |||....|.|||.||.|..|.|||       ||||||..||.|   ||||
BL02966___yla    978 CTGGACGGGAATGATCACCAATTATCACAATCAAAAAAAGCCTAGCGGGA   1027

BSNT_02450___   1055 AAAAGCTAACGAATCAGGAGTA---CAAGCGAAAGTCCATCGC--TTTCC   1099
                     |.|..||..|...|||||..||   ||||||   |||.| .||  |||| 
BL02966___yla   1028 ATATCCTGTCCGGTCAGGCATATATCAAGCG---GTCGA-AGCAATTTC-   1072

BSNT_02450___   1100 TTGAGCG-ACACGGACGTG----TGTTACATAAGGATCATATCGAAACAA   1144
                      |.||.| ||||||.||.|    ||  |||     |.||.|||.|..|||
BL02966___yla   1073 -TAAGGGAACACGGCCGCGAACTTG--ACA-----AACAAATCAAGGCAA   1114

BSNT_02450___   1145 AGGT-ATCTCAAGAAGACGGCCA---GACAGTCGTACGTATTTACC-TGA   1189
                     |||| |.| |..||.||||||.|   .||.||.|.|   .|||||| |||
BL02966___yla   1115 AGGTCAGC-CGTGATGACGGCGAAGCTACTGTTGAA---TTTTACCGTGA   1160

BSNT_02450___   1190 -----AAAATCAACTTCATAAAAAAGATCATGCTGATGATGGCGCGGTAT   1234
                          |..|||     |..||..|||..||     ||| |||        
BL02966___yla   1161 AGGCGAGGATC-----CTGAATTAAGCACA-----ATG-TGG--------   1191

BSNT_02450___   1235 TTTA-TTGGGAAAAGGAAACCTTAATGGGGTTTAGTGAAGATCCTTCGAT   1283
                     |||| ||||...|||||.||..|.|||||.||...|||.||..|.||..|
BL02966___yla   1192 TTTACTTGGCGGAAGGAGACTCTGATGGGATTCCATGAGGACGCGTCTGT   1241

BSNT_02450___   1284 TTATCAGCTTGACTCTCTTCTGCATGTTCATATAAC-AGAACAAAAC---   1329
                     ||| ||||||                   |.|.|.| .||||.||.|   
BL02966___yla   1242 TTA-CAGCTT-------------------AGAAAGCGTGAACCAAGCCCG   1271

BSNT_02450___   1330 --ATTC-----ACGATA---------AAGTGGAA--CAAATGTTTACAG-   1360
                       .|||     |.||||         .|||.|||  |    ||.||..| 
BL02966___yla   1272 CGTTTCTGGTGAGGATATCGAGCGGGGAGTTGAAGCC----GTCTATCGT   1317

BSNT_02450___   1361 -CGCTGAACATA------TCAAAACAGCCTTATCAGATCACTGATATTGA   1403
                      .||||..||||      |||      .||||||.|.|.||.||||||||
BL02966___yla   1318 AAGCTGGGCATACCCGTCTCA------TCTTATCGGCTGACAGATATTGA   1361

BSNT_02450___   1404 ------AAGC---GACAGCCT--GCTCGG--------AAGCATGGTGAGA   1434
                           |..|   ..||||||  .|||||        || |||    |.|
BL02966___yla   1362 TTTATTATTCCCATTCAGCCTCAACTCGGCATCCATCAA-CAT----AAA   1406

BSNT_02450___   1435 GTTGAAACAAAAGATGGAATTGTATTGGAGTTTGATGGAGAATCCGGTA-   1483
                     |     ||||..||.|||||.|...|||||||       ..|.||.||| 
BL02966___yla   1407 G-----ACAAGTGACGGAATGGGGATGGAGTT-------CCACCCTGTAA   1444

BSNT_02450___   1484 ---GT---TTACACAG-TCTCTCGATTCCAA---TGAAA-----------   1512
                        ||   ||| ||.| |.|.|||||  |||   |||||           
BL02966___yla   1445 CAGGTGCATTA-ACGGCTATTTCGAT--CAAATCTGAAAGCGCCTTGCCT   1491

BSNT_02450___   1513 ----------AAG-----GAAA---------TTTCA--------------   1524
                               |||     ||||         |||||              
BL02966___yla   1492 TATCGCGGACAAGAGCTTGAAAAACGCTTGCTTTCATTATTTGATCAAGA   1541

BSNT_02450___   1525 ----------CTGACTAACAGCCGGCTGCAGCG-GCAGGTATTAACGGTC   1563
                               ||||  ||           ||.| |.||.||..||.|   
BL02966___yla   1542 CATTTCCAATCTGA--AA-----------AGGGTGGAGTTAGAAAAG---   1575

BSNT_02450___   1564 TTCGATGCTGATGTATCAGAAATGAAGAAAAAAAGCAGTCAGAGTGACAT   1613
                        ||| |||||     ||||.|..|||||||        |||..|..||
BL02966___yla   1576 ---GAT-CTGAT-----AGAATTTCAGAAAAA--------AGAAAGCGAT   1608

BSNT_02450___   1614 GGTGATGT---ATACTGATTCTTCT----------AAAACAT-ATGAG--   1647
                     |.|| |||   ||||.|     |||          .|||||| |.|||  
BL02966___yla   1609 GCTG-TGTTAAATACGG-----TCTGGACCATGACGAAACATGAAGAGGG   1652

BSNT_02450___   1648 ---TTTTTTGAAGATCAAGGTCAGCTAAACGTTTATGTATACAGC----G   1690
                        ||.|.||      |.|||.||..|||..|||   .|.|.|||    |
BL02966___yla   1653 AGCTTATCTG------ACGGTGAGAAAAAACTTT---CAAAAAGCAGATG   1693

BSNT_02450___   1691 ATACACCTAATCAGTCATTCCCCTATACGTATCGTAATGGAACATTGGCT   1740
                     |.|.|||            ||||||.||||||               ||.
BL02966___yla   1694 AAAAACC------------CCCCTACACGTAT---------------GCA   1716

BSNT_02450___   1741 TAC---GAAAAGGTAGCTTCTCTA-----TATCAGGATGTTATTTACAAA   1782
                     .||   |||||   |||||.|| |     |.||.|.|.|.|||   ||||
BL02966___yla   1717 GACGGGGAAAA---AGCTTTTC-AGAAAGTGTCTGAACGCTAT---CAAA   1759

BSNT_02450___   1783 AAG-----------CGTATGCGTCCGA------TTATCG-TTCAAAGA-G   1813
                     |||           |.||..||..|||      |.|||| |||  ||| |
BL02966___yla   1760 AAGGGCTGGTCTATCATAAACGGACGAAGCTTGTAATCGTTTC--AGACG   1807

BSNT_02450___   1814 AGGATGAA---CGGCATTATGCATGGCTGATCATTATTCAGCCGTTTGGT   1860
                     .||||.||   .|.|.||||||.|||||..||||.||.||||||||.||.
BL02966___yla   1808 GGGATCAAAAGAGCCGTTATGCGTGGCTTGTCATCATCCAGCCGTTCGGC   1857

BSNT_02450___   1861 TCAAATCGCCATGATGCCTATGTAGTGGATGGAGAAACACAAGAGGTGAA   1910
                     ||||||...|||||.||.||..|.||.||||..||.|||.|.||||||||
BL02966___yla   1858 TCAAATGAACATGACGCATACTTGGTTGATGCCGAGACAGATGAGGTGAA   1907

BSNT_02450___   1911 AAGTCTTTATG---AATCATAA   1929
                     |..|.||.|||   |||.|   
BL02966___yla   1908 ACATTTTGATGACAAATGA---   1926


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