Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01781 and BL02996
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01781___yhjG.1.5803.seq
# -bsequence dna-align/BL02996___yhjG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01781___yhjG-BL02996___yhjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01781___yhjG-BL02996___yhjG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01781___yhjG
# 2: BL02996___yhjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1682
# Identity: 971/1682 (57.7%)
# Similarity: 971/1682 (57.7%)
# Gaps: 382/1682 (22.7%)
# Score: 2505.5
#
#
#=======================================
BSNT_01781___ 1 ATGATGATGAAATATGAAGCAGTGATTATAGGAGGAGGGCCGGTCGGATT 50
|||.|.|.|||.|.|.|||||..|||.||.||.||.|||||
BL02996___yhj 1 ------ATGGATTTTGATGTATTGATTGCAGGCGGCGGCCCCGTCGG--- 41
BSNT_01781___ 51 TATGCT---GGCTTCTGAGCTTGCGATGGCCGGAGTAGGAACATGTGTGA 97
|.|||| ||||||.|||||.||..|||||||.||..|.||.|||.|..
BL02996___yhj 42 TCTGCTGACGGCTTCCGAGCTGGCTTTGGCCGGCGTCCGGACCTGTATTG 91
BSNT_01781___ 98 TTGAACGGCTTGAAAAACCTG----TTCCGCAT--TCCAAGGCGTTGACG 141
|.||||||| |||| || |||..||| ||.||.|||.|.||.
BL02996___yhj 92 TCGAACGGC-TGAA-----TGAGCCTTCTCCATTCTCAAAAGCGCTCACA 135
BSNT_01781___ 142 CTGCATCCCCGAACGCTGGAGCTTCTTGAGATGAGAGGGATTTTAGAGCG 191
||||||||.||..|..|.||..|.|||||.|||||.|||.||..|||.||
BL02996___yhj 136 CTGCATCCTCGCTCAATCGAAATACTTGAAATGAGGGGGCTTGGAGAACG 185
BSNT_01781___ 192 GTTCGTATCCAAGGGAA---GCAAGATACC------TTCCGGACATTTT- 231
||..||||.|| ||||| || |||.||.||.|||
BL02996___yhj 186 ------ATTTAAGGAAATTGGCAAG---CCGCTCGGTTCGGGGCACTTTG 226
BSNT_01781___ 232 ------TCAATGCTGGATACCCGTCTGGATTTTTCAG-GCTTGGATA--C 272
|.||..|||||| ||||||||||.| |||| ||.| |
BL02996___yhj 227 CAGGTCTGAAGACTGGAT-------TGGATTTTTCTGCGCTT-GACACGC 268
BSNT_01781___ 273 GAGCTGTCC----TTACACGCTTTTGCTCCCGCAGTCAAAAACAGAAAAG 318
||| || ||||| ||.||..||||.||||...||||.||.|||
BL02996___yhj 269 GAG----CCAATTTTACA--CTGTTCATCCCCCAGTACGAAACTGAGAAG 312
BSNT_01781___ 319 CTGCTTGAAGATCATGCACGAAGCCTGGGAACAGAGGTGT--------TT 360
.|||||||.||.|| |.||| ||||....||||| ||
BL02996___yhj 313 GTGCTTGAGGAACA--CGCGA------GGAATCTCGGTGTCTGCATCCTT 354
BSNT_01781___ 361 CGGGGTGCA-GAGG----CGCTGGCGGTTACGC-------AAAACGGGGA 398
||.||| || ||.| ||||| |.||| ||.||...|.
BL02996___yhj 355 CGCGGT-CATGAAGTTCTCGCTG-----TCCGCGAGCATGAAGACACCGC 398
BSNT_01781___ 399 AGAG------GTCCAAACAATTTTTAAGGATCGGGACGGCAGTGTACGGA 442
.||| |||| |||.||.||||||| .|||.|..|
BL02996___yhj 399 CGAGCTTGTCGTCC------------AGGGTCCGGACGGC-CTGTCCTTA 435
BSNT_01781___ 443 C-AATCACAAGCAAGTTTGC-----CATTGGTGCAGATGGCGCCGGAAGT 486
| ||.| |.||.| |.|.|||||.||.||.|||||||||
BL02996___yhj 436 CTAACC--------GCTTCCTATATCGTCGGTGCCGACGGGGCCGGAAGT 477
BSNT_01781___ 487 ACCGTCCGGAAACAGGCGAAAATTGAGTTTCCGGGAACAGACAGC-ACTG 535
|||.||||.||.||||||...||.|..|||.|.|||||.|| .|| |.|.
BL02996___yhj 478 ACCATCCGCAAGCAGGCGCGCATCGCTTTTTCCGGAACTGA-TGCGAATA 526
BSNT_01781___ 536 TCACCGCTGCGCTTGGGGATGTGGCGCTCCTTT----CTCCGCCGCCGTC 581
|||||||...||||||.||||||.||| || .|||||||...||
BL02996___yhj 527 TCACCGCAATGCTTGGTGATGTGTCGC----TTGAAAATCCGCCGGAATC 572
BSNT_01781___ 582 AGGC-GTGCTGTCCCTTTGCACAAA---AGAGGGCGGTGTTATGATTGTT 627
|| .|.||.|.| ||||...|| .||.|||||.|||.||||.||.
BL02996___yhj 573 --GCATTTCTATAC--TTGCGTGAACCGTGAAGGCGGCGTTGTGATCGTG 618
BSNT_01781___ 628 CCGTTATCTCCAGACCGATACCGTGTCGTTGTGATCAGTCCTTAT----- 672
||.|| |.||.|.|.|.||.|...| |||||.||
BL02996___yhj 619 CCTTT------------AGACGGCGGCATTTTCCGC-GTCCTCATAACGG 655
BSNT_01781___ 673 CGCACGCAAACGCCGAAAG---------ATGTGCCTGTGACTGAGGAAGA 713
||| ||||.|.|||..||| |.|.|||.||.||...||||||
BL02996___yhj 656 CGC-CGCATATGCCCCAAGCTTTGCTTCACGAGCCCGTCACACTGGAAGA 704
BSNT_01781___ 714 GCTGAAAGCTGACCTCCTGCGAATTTGCGGAACTGACTTCGG-TTTAACC 762
..|.|||...||.|||...||.||||||||.||.|||||.|| .|||||.
BL02996___yhj 705 ATTAAAAAAAGAACTCAGCCGCATTTGCGGTACGGACTTTGGAATTAACA 754
BSNT_01781___ 763 GACCC--TTCGTGGATGTCGCGGTTCGGGAACGCC-GCGCGCCAA----G 805
| ||| || ||||||||.||.|||||.||.||| | ||| |
BL02996___yhj 755 G-CCCGGTT--TGGATGTCCCGCTTCGGAAATGCCAG-----CAAGTTGG 796
BSNT_01781___ 806 CGAAACGGTATCGGGACGGCAGAATCTTTCTTGCGGGTGATGCCGCGCAT 855
||.|.|..||.||...|||||||||.|||.|.||.||.||||||||||||
BL02996___yhj 797 CGGAGCATTACCGTTCCGGCAGAATTTTTTTAGCTGGAGATGCCGCGCAT 846
BSNT_01781___ 856 ATTCATTTTCCAGCGGGCGGGCAAGGACTGAATGTCGGCCTTCAGGATGC 905
||.||||||||.||.||.||||||||..|.||||||||.|||||.|||||
BL02996___yhj 847 ATACATTTTCCCGCAGGTGGGCAAGGTTTAAATGTCGGGCTTCAAGATGC 896
BSNT_01781___ 906 AATGAACCTCGGGTGGAAACTGGCGGCGGCCATCAAAGG-CTCTGCGCCT 954
.||||||||.||.|||||.||.||.||....|||||.|| |..||..||.
BL02996___yhj 897 GATGAACCTTGGCTGGAAGCTCGCAGCAAAGATCAACGGACGGTGTCCCG 946
BSNT_01781___ 955 TCGTGGCTTTTGGACAGCTACCATGACGAGCGGCACC----CGGCA---- 996
.| |||||..|.|||||.||||||.|.||..|.|||| |||||
BL02996___yhj 947 GC-TGGCTGCTTGACAGTTACCATCATGAAAGACACCCTGTCGGCAAAGC 995
BSNT_01781___ 997 GCTGAAGGGCTCCTCAGAAACACGGAGGCA----CAGACAAAGCTGATCG 1042
||||| ||.||| |.||| || ||.|||||||||.|.|
BL02996___yhj 996 GCTGA-----TCGTCA-ATACA------CAAATCCAAACAAAGCTGTTTG 1033
BSNT_01781___ 1043 ATTTCACTCAAGCAGG------CCTCC---ATTTGCGA---AGCATGATG 1080
||||.||.|..|.||| ||||| |.||||.| .|||| ..
BL02996___yhj 1034 ATTTTACGCGTGAAGGGCTGTACCTCCGTGAATTGCTATCCGGCAT--AC 1081
BSNT_01781___ 1081 TCGGAGCTGCTGGCCTTCCCTGATGTGAATCGATATGTAGCGGGGCAAAT 1130
||||| ||..|.||.||.|||||.|||.|.||.|..|||||
BL02996___yhj 1082 TCGGA----------TTTTCAGACGTCAATCGCTATCTGGCAGAACAAAT 1121
BSNT_01781___ 1131 TTCTGCGCTCGATGT-CAGATATGAAGCTGATCGTACCATGCC------- 1172
|.|.||||||...|| ||| ||||||||.|||...|..|||||
BL02996___yhj 1122 TGCAGCGCTCAGCGTGCAG-TATGAAGCAGATGAAAAAATGCCTGAACAT 1170
BSNT_01781___ 1173 --GCCGAATCGTTTGAACGGGGCAAGGCTCCCTGACATGAAGCTGATTCT 1220
|| |||||||...|.|.||.||.||.||..|.||||..||
BL02996___yhj 1171 GAGC---------TGAACGGTAAACGCCTGCCCGATATTGACCTGACCCT 1211
BSNT_01781___ 1221 TTCCGACGGCAAT-TCGGAACGGCTGTACAGCTTTCTCCAAAACG--GGA 1267
|||.||.||.|.| || .||||.||.||||..||||.|| .|| |||
BL02996___yhj 1212 TTCAGATGGTACTGTC-AAACGACTTTACACATTTCACC---GCGATGGA 1257
BSNT_01781___ 1268 CATTCGT--TTTGCTGTCATTGAGGCAGGAAGCTGATGA----------- 1304
|.||..| ||.||.| ||||..|..|.|||.|..|.||
BL02996___yhj 1258 CGTTTCTTATTAGCAG-CATTCGGAAAAGAACCGAAGGAATTTTCCAGAC 1306
BSNT_01781___ 1305 ----TCAT---------ATCGAAGTGAAAG-GCTTATGTACGGTAACCGC 1340
|||| ||..||.|||||| | ||..|||| ||.||
BL02996___yhj 1307 TGCCTCATGTCCGGCTCATGCAACTGAAAGCG---ATTGACGG--ACGGC 1351
BSNT_01781___ 1341 CTCGCTTGCAGAACCGAATG----AAAAGTTGCGGGATGTGCATACCATA 1386
|| |||..||||| |||| |||..||
BL02996___yhj 1352 CT--------GAATGGAATGGCGTAAAA------------GCAGCCC--- 1378
BSNT_01781___ 1387 TTGATTCGTCCCGATGGACATGTAGCCTGGGCGGTGGATGCCTCAGCGCC 1436
||||.||.|||||.||.||..||||||||||.|||||
BL02996___yhj 1379 -TGATCCGCCCCGACGGCCACATAGCCTGGGCTGTGGA------------ 1415
BSNT_01781___ 1437 CGATTGTACCCAGG---------------TGATTCAAAAAGGAATCAGCC 1471
|||.| |||.|| |||||....|.||||||.|||
BL02996___yhj 1416 CGAAT---CCCTGGAAAACGCGGAGCAATTGATTGCCGATGGAATCCGCC 1462
BSNT_01781___ 1472 GCTGGTTTTCCGTCACCAGCCGA---GTATAA 1500
|||||| ||.|| |..|||
BL02996___yhj 1463 GCTGGT------------GCGGAAACGCTTAA 1482
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