Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02462 and BL02997

See Amino acid alignment / Visit BSNT_02462 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_02462___ylaJ.1.5803.seq
#    -bsequence dna-align/BL02997___ylaJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02462___ylaJ-BL02997___ylaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02462___ylaJ-BL02997___ylaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02462___ylaJ
# 2: BL02997___ylaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 681
# Identity:     431/681 (63.3%)
# Similarity:   431/681 (63.3%)
# Gaps:         117/681 (17.2%)
# Score: 1234.0
# 
#
#=======================================

BSNT_02462___      1 GTGCGAATTCTTTTCATT-ATCGTACAGCTGACACTTATCCTG---TCCG     46
                     ||||||| ||||||..|| |||.||...|..||..||||.|||   ||.|
BL02997___yla      1 GTGCGAA-TCTTTTTTTTGATCCTAATTCAAACCGTTATGCTGCTTTCAG     49

BSNT_02462___     47 CTTGTGCCTATCAACAAGGAAAACAGGGCCAGAATGTTGAAAAAGAATCA     96
                     |.||.|.|..||       ||||.|..|||.|        |||.|||.||
BL02997___yla     50 CCTGCGGCATTC-------AAAATAATGCCCG--------AAATGAAGCA     84

BSNT_02462___     97 ACAAGA------CAGCAGGAGACTAAACCGATTCACGTAAAGGACACAAC    140
                     | |.||      |.|||..||     |||||||||.|||||..|||...|
BL02997___yla     85 A-ATGAGCTTCCCGGCAACAG-----ACCGATTCATGTAAAAAACAGCGC    128

BSNT_02462___    141 TCAAGAAACAAAAGACAATGGAAC----AAGAACGGATATTGCCAAG-CA    185
                     .||.|       ||.|..| ||||    ||| |||||      |||| ||
BL02997___yla    129 CCAGG-------AGCCGGT-GAACCGCGAAG-ACGGA------CAAGCCA    163

BSNT_02462___    186 TCTTGTCAGCGTTGC--TGAAAAAAACCCCGA------------CGTCAA    221
                     ||   ||| ||..||  ||.|||.|.|.||||            .|||||
BL02997___yla    164 TC---TCA-CGGCGCCTTGTAAAGATCACCGAAAGCGTTCCGGGTGTCAA    209

BSNT_02462___    222 GGATGCAACAGCCGTTGTGCTGGG--GGGTTATGCTGTTGTTGGGATTGA    269
                     .|||||.||.|||||.|||||.||  ||.|  .||.||.||.||.|||||
BL02997___yla    210 TGATGCGACCGCCGTCGTGCTAGGCAGGCT--CGCCGTCGTCGGAATTGA    257

BSNT_02462___    270 TGTCGATGATACTTTGGACAGAAGCAAAGTGGAAACCATTAAATATTCTG    319
                     |||..|.||.|.||||||..|.||||||||.|||.|||||||.|||||.|
BL02997___yla    258 TGTGAAAGACAATTTGGAACGCAGCAAAGTCGAATCCATTAAGTATTCGG    307

BSNT_02462___    320 TAGCTCAGGCGCTAAAGAATGATCGATATGGCGCCAACGCAGTAGTCATT    369
                     |.|||.|.||.||..|||||||.|..|||||.||.|||||.|..||..|.
BL02997___yla    308 TCGCTGAAGCTCTGCAGAATGACCCTTATGGAGCAAACGCCGCCGTTGTC    357

BSNT_02462___    370 GCTGATCCCGATACGGTAGGCCGCCTTCGCGAAATGAGCAGAGAAAT--C    417
                     ||.||||||||.||.|||..||||||.||.|.||||.||||||||||  .
BL02997___yla    358 GCGGATCCCGACACTGTAAACCGCCTGCGGGCAATGGGCAGAGAAATTCA    407

BSNT_02462___    418 AGCGAGGGCCATCCGGTAACAGGTATACTGGATGAATTAGCTGCAATTGT    467
                     |||  |||.|.|||.||.|.|||.||.||.|||||..|.||.||.|||||
BL02997___yla    408 AGC--GGGACGTCCTGTCAAAGGGATTCTCGATGAGCTGGCAGCCATTGT    455

BSNT_02462___    468 CGGCCGAGTGCTTCCCGAAGTGCCTAACGATGTGATTGACAATGAAGACG    517
                     |||.||.||.|||||.||||||||.|||||.|       |||  .|||| 
BL02997___yla    456 CGGGCGCGTCCTTCCTGAAGTGCCGAACGACG-------CAA--CAGAC-    495

BSNT_02462___    518 AACC-GCAAACAAAGC--AGCAAAAT--------GACCAATTAAAT---A    553
                     |||| |||||||||.|  | ||||||        |||||..|.|||   |
BL02997___yla    496 AACCAGCAAACAAATCCTA-CAAAATCCAACAACGACCAGCTGAATGAGA    544

BSNT_02462___    554 GAAAACAGCAACAGGAAATGGAGAAGGAGCAAAACGATCAATCTGATC-A    602
                     ||||.||..|||   ||.|.||.|||.||||.||..||||||| ||.| |
BL02997___yla    545 GAAACCAAAAAC---AACTCGAAAAGAAGCAGAATAATCAATC-GAACAA    590

BSNT_02462___    603 TCATATGAAAAA---GAACAACAATGACTAA    630
                     .|||||||||||   |  ||.||||.|    
BL02997___yla    591 ACATATGAAAAATCGG--CAGCAATAA----    615


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.