Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04995 and BL03005

See Amino acid alignment / Visit BSNT_04995 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:11
# Commandline: needle
#    -asequence dna-align/BSNT_04995___bdbC.1.5803.seq
#    -bsequence dna-align/BL03005___bdbC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04995___bdbC-BL03005___bdbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04995___bdbC-BL03005___bdbC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04995___bdbC
# 2: BL03005___bdbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 419
# Identity:     320/419 (76.4%)
# Similarity:   320/419 (76.4%)
# Gaps:           7/419 ( 1.7%)
# Score: 1181.0
# 
#
#=======================================

BSNT_04995___      1 ATGAAAAATAGAATCGTATTTTTATATGCTTCCTGGGTTGTGGCTC-TTA     49
                     ||||||||||.|.|..|.|||.|.||.|...|||||.|.||  ||| |||
BL03005___bdb      1 ATGAAAAATAAACTGCTTTTTCTGTACGGCGCCTGGATCGT--CTCATTA     48

BSNT_04995___     50 TC-GCTATGCTGGGCAGCCTGTATTTCAGTGAAATCAGAAAGTTTATTCC     98
                     .| ||.|.|||.||||||.||||.|||||.||||||.|.||.||||||||
BL03005___bdb     49 ACGGCGACGCTAGGCAGCTTGTACTTCAGCGAAATCCGCAAATTTATTCC     98

BSNT_04995___     99 ATGTGAACTGTGCTGGTACCAGCGTATCCTCATGTATCCGCTCGTCCTGA    148
                     .||.||||||||||||||.|||||.||..|.||||||||||||||.||||
BL03005___bdb     99 TTGCGAACTGTGCTGGTATCAGCGGATTATGATGTATCCGCTCGTGCTGA    148

BSNT_04995___    149 TTTTAGGCATCGCCACCTTTCAAGGGGACACACGAGTGAAAAAATATGTG    198
                     ||.|.||.||.||.||.|||||.||.||..|.||.|||||||||||.|||
BL03005___bdb    149 TTCTCGGAATTGCGACATTTCAGGGCGATGCCCGCGTGAAAAAATACGTG    198

BSNT_04995___    199 CTCCCAATGGCGATTATAGGGGCATTCATTTCGATCATGCATTACTTAGA    248
                     ||.||.||||||.|.||.||.|||..||||||..|.|||||.|||.|.||
BL03005___bdb    199 CTGCCGATGGCGGTGATCGGCGCAGGCATTTCCCTGATGCACTACATGGA    248

BSNT_04995___    249 GCAAAAAGTGCCCGGCTTTAGCGGCATTAAGCCATGTGTCAGCGGCGTGC    298
                     .||||||.|.|||||.||.|.|||||||||.||.|||||||..||.||||
BL03005___bdb    249 ACAAAAAATTCCCGGATTCAACGGCATTAAACCGTGTGTCACAGGAGTGC    298

BSNT_04995___    299 CGTGCTCGGGCCAATATATTAACTGGTTTGGTTTTATTACGATTCCATTC    348
                     |.|||||.||.||.|||||.||.|||||.|||||.||.||||||||.||.
BL03005___bdb    299 CTTGCTCAGGGCAGTATATCAATTGGTTCGGTTTCATCACGATTCCGTTT    348

BSNT_04995___    349 CTGGCCCTGATTGCTTTTATCCTGATTATCATTTTTATGTGCCTGCTGAA    398
                     ||.|||||.|||||.|||||..||||||||||||||||||||.|.|| .|
BL03005___bdb    349 CTCGCCCTTATTGCATTTATTTTGATTATCATTTTTATGTGCTTTCT-CA    397

BSNT_04995___    399 AGGCGAAAAATCTGAATAA    417
                     |||.||||.|  .||.|||
BL03005___bdb    398 AGGGGAAAGA--CGAGTAA    414


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.