Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01351 and BL03016

See Amino acid alignment / Visit BSNT_01351 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_01351___acoR.1.5803.seq
#    -bsequence dna-align/BL03016___acoR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01351___acoR-BL03016___acoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01351___acoR-BL03016___acoR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01351___acoR
# 2: BL03016___acoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2017
# Identity:    1197/2017 (59.3%)
# Similarity:  1197/2017 (59.3%)
# Gaps:         380/2017 (18.8%)
# Score: 3092.5
# 
#
#=======================================

BSNT_01351___      1 ATGAATTCGGTCCCAAACG-------ATTTGCAAACCTGGAAACGTTTTG     43
                     ||||||.||       |||       ||||..|.||.||||||||.||||
BL03016___aco      1 ATGAATCCG-------ACGCCCTGCTATTTAAATACGTGGAAACGCTTTG     43

BSNT_01351___     44 TGAAAGACGGTGTGCTTGACGAAGCCCGATT-AAGAAAACGGATTGCAGA     92
                     |..|.||.||..|.|||||..|.|||||.|| ||.|||         |||
BL03016___aco     44 TTCAGGAAGGGCTTCTTGATCAGGCCCGCTTGAACAAA---------AGA     84

BSNT_01351___     93 GTCATGGCAT--------CGCTGCAAAA----AAGCTGAGGTCAATCCTT    130
                     |||||||.||        ||||||||||    ||    |.||||||||.|
BL03016___aco     85 GTCATGGAATCATGGTACCGCTGCAAAAATCGAA----ATGTCAATCCGT    130

BSNT_01351___    131 ATTTAGAAAAAGGCCCG--AAGGTTTTACAGCAAACGGAGCTGGA-----    173
                     |||||||.|||||.|.|  ||  |||||.|  |||       |||     
BL03016___aco    131 ATTTAGATAAAGGACAGTCAA--TTTTAAA--AAA-------GGATTTAT    169

BSNT_01351___    174 TCAGCAGTCAAAA----AAACATTCATTCTTCTTGACG--ACCGCAAAGC    217
                     ||..|..||||||    |||||.||.||.|||.|  ||  |.|||...||
BL03016___aco    170 TCGACGCTCAAAAAAAGAAACACTCGTTATTCCT--CGATATCGCCCTGC    217

BSNT_01351___    218 CTTACCTCGAAAAACTGCTGCC-TGCCATAAAAGAAATGGAAATGATGGC    266
                     ||||.||..|.||..| |.||| ||...|||||||...||||||||||||
BL03016___aco    218 CTTATCTACACAATAT-CAGCCGTGAATTAAAAGAGTCGGAAATGATGGC    266

BSNT_01351___    267 GCTGTTAATTGATTCAGACGGTGTTGT-----TTTGGCATTGGACGGCCA    311
                     |||..|.||.|||.|.|||||    ||     ||..|| ||||.||||  
BL03016___aco    267 GCTCCTGATCGATGCCGACGG----GTACGTATTAAGC-TTGGCCGGC--    309

BSNT_01351___    312 TTCCCGCG--CGCTCTATGAAGCCAAACGCATCAACTTTGTCGAAGGGGC    359
                     |.||.|.|  ||||..|.||.||.|||...|||||.||||||||  ||||
BL03016___aco    310 TGCCGGAGGACGCTTGAAGAGGCGAAAAAAATCAATTTTGTCGA--GGGC    357

BSNT_01351___    360 AT--GCTGGACGGAAACGGCTGTCGGAACAAATGCGATTGGCACGGCACT    407
                     .|  |||||||||||||.|..|||||.||.||.||.||.||.||.|||||
BL03016___aco    358 GTGCGCTGGACGGAAACAGAAGTCGGCACGAACGCCATCGGAACCGCACT    407

BSNT_01351___    408 CCACATTAGCGAGCCGGTTGCGATACAAGGATCAGAGCATTACTCCATTG    457
                     ..|.||..||||..|.||..|.||.||.||..|.|||||||..||..|.|
BL03016___aco    408 TGAAATCGGCGAAGCTGTCACCATTCACGGGACCGAGCATTTTTCGGTCG    457

BSNT_01351___    458 CTTCCCATCTTTGGAACTGTTCAGCCGCTCCGATTCACCATGAGGATGGC    507
                     |||||||.|.|||||.||||||.||.||.|||||||.|.||||.||.|||
BL03016___aco    458 CTTCCCACCATTGGAGCTGTTCTGCTGCACCGATTCGCGATGAAGACGGC    507

BSNT_01351___    508 AGCCTTGCGGGTGTGATTGACATATCGTGTCCGGCG----GCAGGCGCTC    553
                     |.|.||..||||.|.||.||.||.||.||.|...||    |.|||    |
BL03016___aco    508 ACCGTTATGGGTTTAATCGATATTTCCTGCCTCACGGATAGAAGG----C    553

BSNT_01351___    554 ATCCTCATATGCTCGGTAT---TGCCACTGCGATCGCCTATG-CAGCTGA    599
                     ||||...||||||.||.||   |||||||||   |||..|.| ||.| ||
BL03016___aco    554 ATCCCTTTATGCTTGGGATGGCTGCCACTGC---CGCACACGCCATC-GA    599

BSNT_01351___    600 ACGGGAACT---CGCAGCTA--AAAGCCGTGAGAAA--GAGCTCGAGCTG    642
                     |||.||..|   ||||..||  |||      |.|||  .||| ||||||.
BL03016___aco    600 ACGCGAGATCAGCGCACATACGAAA------AAAAACGAAGC-CGAGCTC    642

BSNT_01351___    643 ATCAGCC---GTTTTGGAGAGAGGGCT--GCATCCAGTGTGCCG---ATG    684
                     |||||||   ||.|||.|.|.|..|.|  |.|||     .||||   ||.
BL03016___aco    643 ATCAGCCATTGTCTTGAAAAAATCGATTCGGATC-----AGCCGTTTATC    687

BSNT_01351___    685 G--TGCTATGCAATACCAAGCAGCACATCATCAGT----GCGAGCATACC    728
                     |  |||.|||.||    |||    |||..||| ||    |||||||.|||
BL03016___aco    688 GTCTGCAATGAAA----AAG----ACAAAATC-GTAGCCGCGAGCAGACC    728

BSNT_01351___    729 GATTC--GAACCTCAAT---ACCGGATTGGCAGGGCCGGC----ACCTGT    769
                     |.|.|  ||||.|...|   ||.|||...|.|.||..|.|    |.||||
BL03016___aco    729 GGTGCGGGAACGTTTTTCCGACTGGAGGAGAATGGATGTCAATGATCTGT    778

BSNT_01351___    770 ATGAGC-------TGAAGGAACGGGGCTACTCAATCGAAAAAGCTGTCA-    811
                     ||||||       ||..||   |||||           |.||||.|.|| 
BL03016___aco    779 ATGAGCGCGGGTTTGCCGG---GGGGC-----------ACAAGCAGACAA    814

BSNT_01351___    812 ---------CCATA----GGAG----------ATGGCG---GCACTTGTT    835
                              |||.|    ||||          |.|.||   |||||.|.|
BL03016___aco    815 TTTTCTCCGCCAAAGACGGGAGGCCCCTCGGTAAGTCGATTGCACTGGCT    864

BSNT_01351___    836 TTTATCTTTCGGAACAAAAGAAAAAGAAG-----------GTGTTTCGAT    874
                     ....|.|..||.||.||||       .||           ||.|..||.|
BL03016___aco    865 GAAGTGTCCCGCAATAAAA-------CAGCTCCATCACTCGTATCCCGTT    907

BSNT_01351___    875 TCA---AT--GGAGTG-ATCGGG--CAAAGCGGCCGAT--CGCAAGCGAT    914
                     |||   ||  || ||| |.|.||  |||..|||.||.|  .|||.|||.|
BL03016___aco    908 TCATCTATCCGG-GTGAAACAGGAACAAGCCGGGCGTTTCAGCAGGCGCT    956

BSNT_01351___    915 GCTGATGAACCTTGAACGTGCAGC-TGCGG------CAGATGCAACGGTC    957
                     .|      |||    ||.||..|| |||||      |.|||||.|..||.
BL03016___aco    957 TC------ACC----ACATGAGGCTTGCGGCTAAGACGGATGCGAATGTA    996

BSNT_01351___    958 TGTTTGTCGGGCGAAACTGGTACGGGAAAGGAAGTCGCGGCTCGCGCGCT   1007
                     |...|.|.|||.|||||.||..|.|||||||||.|.||.||..|.||..|
BL03016___aco    997 TACATATGGGGGGAAACAGGCTCCGGAAAGGAACTTGCCGCGAGGGCCAT   1046

BSNT_01351___   1008 TCAT-----GAGAACAGTGAGAGACGGCACGGTCCGTTTATTGCTGTCAA   1052
                     ||||     |||..||..||||.|||||     ||.|||||.||.|||||
BL03016___aco   1047 TCATCAGGCGAGCGCACGGAGAAACGGC-----CCTTTTATCGCCGTCAA   1091

BSNT_01351___   1053 TTGCGGAGCGATTCCGTCTGA---TTTGATTGAAAGCGAACTATTCGGAT   1099
                     .|||||.||.||||   ||||   .|||||.||.||||||.|.|||||.|
BL03016___aco   1092 CTGCGGCGCCATTC---CTGAAAGCTTGATGGAGAGCGAATTGTTCGGCT   1138

BSNT_01351___   1100 ATGCAGAGGGCGCTTTTACGGGAGCGAAACG----------AAATGGCTA   1139
                     ||||.||.|||||.|||||.|||||.||.||          |||.||   
BL03016___aco   1139 ATGCCGAAGGCGCATTTACAGGAGCAAAGCGCCGCGGTTCAAAAGGG---   1185

BSNT_01351___   1140 TAAAGGCGCCTTTCAAAAAGCGAATCAAGGCAC-ATTATTTTTAGATGAA   1188
                       |||     |||.||.|.||..|.|..||.|| ||| |||.|.||||||
BL03016___aco   1186 --AAG-----TTTGAACAGGCTCACCGCGGTACGATT-TTTCTCGATGAA   1227

BSNT_01351___   1189 ATCGGAGAAAT---TTCCCACTCGATGCAGGTTGCGCTTTTACGGGTGCT   1235
                     |||||.||.||   ||..||   ||||||.||.|||||.|||.||.| |.
BL03016___aco   1228 ATCGGTGAGATCCCTTATCA---GATGCAAGTGGCGCTCTTAAGGAT-CA   1273

BSNT_01351___   1236 TC-AGGAACGCAAGATAACGCCAATCGGCGGGACGAAAGAAATTCCGGTT   1284
                     || |.||.||.|||.|.||.||.||||||||.||....|||.||||..|.
BL03016___aco   1274 TCGAAGAGCGGAAGGTCACTCCGATCGGCGGAACCCGTGAAGTTCCCCTC   1323

BSNT_01351___   1285 GATATCAGAGTTATTGCCGCCACACATTGTGATTTACGCGAGCTTGCCGA   1334
                     ||.||||||.|.||..|.||.|||||..|||||.|....||.|||..|.|
BL03016___aco   1324 GACATCAGAATCATCACAGCAACACACCGTGATCTGAAAGACCTTCTCCA   1373

BSNT_01351___   1335 AAACGGAAAAATCAGAGAGGACTTGTTTTACCGTCTTCATGTCTATCCAA   1384
                     |||.|||||.||..|.||.||..|||.||||||.||||||||.||.||..
BL03016___aco   1374 AAAAGGAAAGATACGTGAAGATCTGTATTACCGCCTTCATGTTTACCCCG   1423

BSNT_01351___   1385 TTGAACTCCCTCCATTACGCGATCGCACCGAGGATATCCCGGACCTCTTT   1434
                     |..||.|.||.||..|..|.||.||||..|||||.||.||.||    |||
BL03016___aco   1424 TAAAAATACCGCCGCTCAGAGAGCGCAAAGAGGACATACCTGA----TTT   1469

BSNT_01351___   1435 G----AGCACTACAAACAGAAGAATCATTGGCCAGG-CGAACTTCCTTCT   1479
                     |    ..|||||..||||..|..|..|.||| .||| |||..||||..|.
BL03016___aco   1470 GTTCCGCCACTATCAACAACAACACGAGTGG-AAGGCCGAGTTTCCGCCG   1518

BSNT_01351___   1480 GATTTTTGTAATGTGCTGAAGCAATGGAAGTGGCCGGGGAATATCCGTGA   1529
                     .||||||..||...|||..||.|||...|.|||||.||.||.||||||||
BL03016___aco   1519 AATTTTTTCAAGCGGCTTCAGGAATATCATTGGCCTGGTAACATCCGTGA   1568

BSNT_01351___   1530 GCTGTTTAATGTGTTTGAACGTCTTTCTATCAG------ATTTCCGGACG   1573
                     |||.||||||...||||||.|.|      ||||      |||||||||.|
BL03016___aco   1569 GCTCTTTAATACATTTGAAAGGC------TCAGGGTTTTATTTCCGGAAG   1612

BSNT_01351___   1574 GCCGGCTGAGGGATGAACCGCTACC-------CGCTTTACTGGAAGCCG-   1615
                     ||.|.||||..|||   ||| |.||       |||..|.|||||   || 
BL03016___aco   1613 GCGGACTGATCGAT---CCG-TCCCAATACAGCGCGGTGCTGGA---CGG   1655

BSNT_01351___   1616 -CTGGATTG-----CCGGC-CAGC-TCTGCAGAAAAAAAGCCGGCTGCTG   1657
                      ||.|||||     .|||| ||.| ||||.||||.|              
BL03016___aco   1656 ACTCGATTGGAACAGCGGCGCACCTTCTGAAGAAGA--------------   1691

BSNT_01351___   1658 CCGGCGTGCTTACCTTTCGTGAGCAAATCCAAAAGGATATGATGATCAAA   1707
                     |||    |||.||.||..|.||.|...|.|||||..|.|.||||||..||
BL03016___aco   1692 CCG----GCTCACATTCAGAGAACGTGTTCAAAAACAAACGATGATGGAA   1737

BSNT_01351___   1708 GCGCTTG-AATCAGCAAAAGGAAACGTCTCTCAAGCCGCAAAAATCAGCG   1756
                     || .||| ||..|.|.||||||||.||.||..||||.||.||..|...||
BL03016___aco   1738 GC-TTTGCAAAAAACGAAAGGAAATGTGTCCGAAGCGGCCAAGCTGGCCG   1786

BSNT_01351___   1757 GGATCCCCCGAAGCACTTTCTACAAACGCCT--GAAAAAATTCAAC---T   1801
                     |.||.||..|||||||.||.|||||.||.||  |||||.||  |||   |
BL03016___aco   1787 GAATTCCAAGAAGCACATTTTACAAGCGGCTTCGAAAATAT--AACCTTT   1834

BSNT_01351___   1802 TGTCCGCTGAATCATAA   1818
                     .|               
BL03016___aco   1835 AG---------------   1836


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.