Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02902 and BL03023
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02902___xynB.1.5803.seq
# -bsequence dna-align/BL03023___xynB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02902___xynB-BL03023___xynB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02902___xynB-BL03023___xynB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02902___xynB
# 2: BL03023___xynB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1906
# Identity: 909/1906 (47.7%)
# Similarity: 909/1906 (47.7%)
# Gaps: 662/1906 (34.7%)
# Score: 1487.0
#
#
#=======================================
BSNT_02902___ 1 ATGA-----------AGAT-TACCAATCCCGTACTTAAAGGATTCAATCC 38
|||| |.|| |||.||.||.||..|.|..||.||..||||
BL03023___xyn 1 ATGAGCGGTGAACACACATATACGAACCCGGTGTTGACCGGTTTTCATCC 50
BSNT_02902___ 39 CGA---TCCAAGTATTTGTAGGGCAGGAGAGGATTATTATATCGCTGTA- 84
.|| |.|||.||| .||.|..||.||.||||||||.|| |.||.|
BL03023___xyn 51 GGACCCTTCAATTAT---CAGAGTCGGGGAAGATTATTACAT-GGTGAAC 96
BSNT_02902___ 85 TCTACATTTGAGTGGTTTCCGGGAGTCCAGATACACCACTCAAAAGATTT 134
||.||.||..|||..||.||||.|.||...||...||||||.||||||||
BL03023___xyn 97 TCAACGTTCCAGTATTTCCCGGCAATCGTTATTTCCCACTCTAAAGATTT 146
BSNT_02902___ 135 AGTAAATTGGCACTTAGTTGCACATC--------CATTACAGA----GAG 172
|||..|||||.| |..|||| .||.||.|| ||
BL03023___xyn 147 AGTCCATTGGAA-------GATCATCGGCCACGGAATCACGGAAAATGA- 188
BSNT_02902___ 173 TTTCACAATTAGACATGAAAGGAAATCCAA--ATTCAGGTGGGGTTTGGG 220
|..|||.|||.|| ..|||.|| ||| ||||....||..||||||
BL03023___xyn 189 ----AGGATTGGACCTG-TCGGATAT-CAATGATTCGCACGGCATTTGGG 232
BSNT_02902___ 221 CACC--ATGTTTAAGC-TATAGTGATGGGAAGTTTT-------------- 253
|.|| ||.||| | |||..|.|.||.|..||.|
BL03023___xyn 233 CGCCTGATATTT---CGTATCATAACGGAACCTTCTACATCTTCGCGACG 279
BSNT_02902___ 254 ----GGCTTATCTATACGGA-----TGTTAAGGTAGTAGATGGCGCATGG 294
||||.| ||||| |||.| |..|.||| .|
BL03023___xyn 280 CACAGGCTGA-----ACGGACCGACTGTCA------TCAACGGC----CG 314
BSNT_02902___ 295 AAAGATTGTC-----ACA-ATTATTTAGTTACTTGTGA--AA-------- 328
||||.|..|| ||| |||| ||| ||
BL03023___xyn 315 AAAGCTGATCCGCAGACAGATTA------------TGATCAAGTCCAGCC 352
BSNT_02902___ 329 ----CGATTAATGG--TGATTGGAGTGAG-CCGATTACATTAAAT----- 366
|| ||.|| |.|||..| || |||.||.|||| .||
BL03023___xyn 353 GCCCCG---AAGGGCCTTATTCAA---AGCCCGTTTTCATT-GATGAAGG 395
BSNT_02902___ 367 -AGCTCGGGATTTGATGCTTCTTTGTTCCATGATAAGGATGGAAAAAAGT 415
||| ||..|.|||.|||||...|||..|||....||.||.|||.|.|
BL03023___xyn 396 CAGC---GGCATCGATCCTTCTCACTTCGTTGACGGCGACGGGAAACACT 442
BSNT_02902___ 416 ATTTATTAAATATGTTATGGGATCACCGTATTGATCGGCA--CTCATT-- 461
|||||.| |.||| ||..|| .|.||| |||.||
BL03023___xyn 443 ---------ATATGCT----GCTCA--GTCCTG-CCTGCACGCTCTTTCC 476
BSNT_02902___ 462 ------TGGAGGAATTGTTATACAGGAATATTCTGATAAAGAGCAAAAAT 505
||.||.| |..||||..||.|.|.| .||||
BL03023___xyn 477 TCTAAATGAAGAA-----TGCACAGACATCTCCGG----CGAGC------ 511
BSNT_02902___ 506 TAATCGGTAAACCAAAAGTTATATTTGAAGGAACGGATAGAAAACTGACA 555
||||..| .||||..|||||.||.|..||||....|.|.
BL03023___xyn 512 ----CGGTTCA--------GATATGGGAAGGGACTGGGAGAAGGGCGCCT 549
BSNT_02902___ 556 GAAGCTCCGCATCTTTATCATA----TCGGGAACTATTATTATT------ 595
||||..|||||| ||..|.|.| .||| ||||||.|
BL03023___xyn 550 GAAGGGCCGCAT-TTGCTGAAAAAAGACGG------TTATTACTACGCGA 592
BSNT_02902___ 596 TATTAACTGCAGAAGGAGGAACACGG---TACGAACATGCTGCTACAATT 642
|||| .|||||||||||||| ||| |.|..||..|.| |||.|..
BL03023___xyn 593 TATT---GGCAGAAGGAGGAAC-CGGATATTCCCACTCGAT--TACGACA 636
BSNT_02902___ 643 GCCCGTTCTGCAAATATTG-AGGGGCCATATGAAGTTCATCCCG-ATAAT 690
|||||.||..|..|| ||| |.||.||.|||| ||..|..|||| |||||
BL03023___xyn 637 GCCCGCTCAACGCAT-TTGTACGGTCCTTATG-AGCCCTGCCCGTATAAT 684
BSNT_02902___ 691 CCAATCTTAACGTCATGGCATGACCCAGGA-AATCC-ATTGCAAAAATGT 738
||.||.|||||| || |.|| ||||| ||| ..||| ||| ||||.|...
BL03023___xyn 685 CCGATTTTAACG-CA-GACA-GACCC-GGATGCTCCGATT-CAAAGAGCA 729
BSNT_02902___ 739 GGTCA-TGCATCCATTGTTCAAACACATACAGATGAGTGGTATTTAGCTC 787
||.|| .|||..| |.|||.||||.||.|..|..||.||||
BL03023___xyn 730 GGACACGGCAAGC-TCGTTGAAACCCAGAATGGAGAATGGT--------- 769
BSNT_02902___ 788 ATTTAACGGGACGTCCTATTCATCCTGACGATG---ATTCAATTTTTCAG 834
||.||...|||..||.|.|||| | |.||||..| ||
BL03023___xyn 770 --------GGGCGGTGTATCTATGCGGACG--GCCCAATCAAGGT---AG 806
BSNT_02902___ 835 C-AGAGAGGATACTGTCCTTTGGGCAGAGAAACAGCTAT--------TCA 875
| |.|.| ||.| ||||| ||.||.||.|||.| ||.
BL03023___xyn 807 CTATACA----ACGG----TTGGG-AGGGAGACCGCTTTGGATCCCGTCG 847
BSNT_02902___ 876 AAAACTTTACTGGAAAGATGAATGGCCCTATGTAGTAGGTGGAAAAGAAG 925
|| ||||..|||| |.||| |.||..||....||.||
BL03023___xyn 848 AA--------TGGACGGATG-ACGGC------TGGTTTGTCATCAACAA- 881
BSNT_02902___ 926 GAAGCTTGGAGGTAGATGCACCTTCTATACCCGAAACAATATTTG--AAG 973
||||.||| .|||||..| ||| .||
BL03023___xyn 882 ----CTTGAAGG----------------GCCCGAGTC-----TTGTTCAG 906
BSNT_02902___ 974 C--------AACGTACCCGGAAGT------TGATGAATTTGAGGA--TTC 1007
| |||.| |||..|||| .|||||| |.|| |||
BL03023___xyn 907 CGCGCTCCAAACCT-CCCCCAAGTCAAATGGGATGAA----AAGAATTTC 951
BSNT_02902___ 1008 AACATTAAATATAAATTTTCAAACTTTAAGGATTCCATTCACGAATGAAT 1057
.|| |||| ||.|||| |.||
BL03023___xyn 952 GAC---------------------------GATT---TTGACGA--GGAT 969
BSNT_02902___ 1058 ----TAGGTTCATTGACTCAAGCGCCA----------AATCATTTACGAT 1093
|.||| .|||||| |.|| |||| .||||
BL03023___xyn 970 ACGCTCGGT--CTTGACT-----GGCAGTTTGTCAGGAATC----CCGAT 1008
BSNT_02902___ 1094 TATTC-----GGTCATGAATC-ATTGACCTCGACATTTACTCAGGC---- 1133
.|||| ||||.|..||| |..||||..||.|| |||||||
BL03023___xyn 1009 CATTCCAGCTGGTCTTTGATCGAGAGACCGGGATAT---CTCAGGCTGTG 1055
BSNT_02902___ 1134 --------------ATTT-------------------------GTAGCCA 1144
|||| ||.|.||
BL03023___xyn 1056 GACAGGTGATTGGGATTTACATGACATCCGTGCAAAAAATACGGTCGTCA 1105
BSNT_02902___ 1145 GACGCTGGCAAAGTCTCCATTTTGAAGCCGAAACTGC-------TG---- 1183
||.| ||.|||| |.||| ||.|.||.|| ||
BL03023___xyn 1106 GAAG--GGAAAAG-CACCA--------CCTATACAGCGCCGGCGTGAAAC 1144
BSNT_02902___ 1184 TTGAGTTTT----------ATCCGGAAAATTTTCAACAAGCCGCTGGATT 1223
|.||.|||| .|||||| .|.|||||.| ||||.
BL03023___xyn 1145 TCGACTTTTCACCTTCGGCCTCCGGA-------GAGCAAGCGG--GGATC 1185
BSNT_02902___ 1224 G-GTGAATTACTACAATACAGA----------GAACTGGACGGC----TC 1258
| .|| .|||||||..|| || |||.|| |.|| ||
BL03023___xyn 1186 GTCTG--CTACTACAGCAC-GAATAATTATTTGAAATG--CTGCTTGATC 1230
BSNT_02902___ 1259 T-TCAAGTCACGCATGATGAAGAACTTGGCCGCATTCTTGAATTAACAAT 1307
| |.||| |.|.|| ||||||.|..||.|| |.||| |||
BL03023___xyn 1231 TATGAAG--AAGGAT--TGAAGATCAAGGTCG-----TGGAA-----AAT 1266
BSNT_02902___ 1308 ATGTGACAACTTTTCTTTTTCACAGCCATTAAATAATAAAATTGTTATTC 1357
|..|.|..|| |||| ||||..|
BL03023___xyn 1267 ---------CGCTCCGGTT-----GCCA---------AAAAACG------ 1287
BSNT_02902___ 1358 CTCGTGAAGTAAAGTATG---------------TATATTTAAGAG----- 1387
||.|.||| |||..||| |.|.|.|.|.||
BL03023___xyn 1288 CTGGGGAA--AAAACATGCCGAGGCCGGCCCGCTGTTTCTGAAAGCTGTC 1335
BSNT_02902___ 1388 -TAAATATTGAAAAAGACAAATATTATTATTTTTA-TTCTTTTAACAA-A 1434
|.|||| .|.|||||| ...||||||| |.|..|||..|| .
BL03023___xyn 1336 ATCAATA-AGCAAAAGA--------GGGATTTTTACTACAGTTATGAAGG 1376
BSNT_02902___ 1435 GAAG-ATTGGCACAAAATTGACATAGCACTGGAATCGAAAAAATTATCAG 1483
|||| ||||||||.| |.|.|| ||..| |||
BL03023___xyn 1377 GAAGCATTGGCACCA-----------CGCGGG---CGGTA-------CAG 1405
BSNT_02902___ 1484 ATGA----------TTACATCCGTGGGGGAGGATTC------TTCACAGG 1517
|.|| ||| |.| |..||||.||| ..||.|||
BL03023___xyn 1406 AGGACGCCAGTTTTTTA-AGC----GATGAGGGTTCGCGTGACGCAAAGG 1450
BSNT_02902___ 1518 GGCCT----------TTGTAGGGATGCAAT--GCCAAGATACCAGTGGTA 1555
|.|.| |.||.||||| || |||| |||.|.|.|| |
BL03023___xyn 1451 GACATACGGGAACGATGGTCGGGAT---ATTCGCCA--ATAACGGCGG-A 1494
BSNT_02902___ 1556 ATC-----ATA---TTCCGGCCGACTTTAGA-TATTTTCGTTATAAAGAA 1596
|.| |.| |.|| ||.|| |||.|| |..||.||.||||..|.|
BL03023___xyn 1495 AGCGGCAGAAAGGCTGCC-GCTGA-TTTTGACTGGTTCCGCTATATTGCA 1542
BSNT_02902___ 1597 AAATAA 1602
.|.|||
BL03023___xyn 1543 TATTAA 1548
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