Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01411 and BL03031

See Amino acid alignment / Visit BSNT_01411 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_01411.1.5803.seq
#    -bsequence dna-align/BL03031___yfhC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01411-BL03031___yfhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01411-BL03031___yfhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01411
# 2: BL03031___yfhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity:     320/634 (50.5%)
# Similarity:   320/634 (50.5%)
# Gaps:         218/634 (34.4%)
# Score: 844.5
# 
#
#=======================================

BSNT_01411         0 --------------------------------------------------      0
                                                                       
BL03031___yfh      1 ATGAACGACACGCTAGAAATCCAAAGTATTCGCGATTGCGTCAGAAATAG     50

BSNT_01411         1 ----------------------------------------------ATGC      4
                                                                   .|||
BL03031___yfh     51 AAGAACGATTCGAAAGTTTAAACAGGATCCGGTGCCGAAGGAAGTGGTGC    100

BSNT_01411         5 TTGAA-------ACG--GCAAAATATGCGCCAAATCACAGAG-TGACAGA     44
                     |.|||       |.|  ||.|..|||||.||.||.|||| || |||||||
BL03031___yfh    101 TGGAACTCTTGGAAGATGCGATTTATGCTCCGAACCACA-AGCTGACAGA    149

BSNT_01411        45 GCCATGGAGATTTATTTACGTTTCCAGTGA--GACA--GGTAAAGCGAAC     90
                     .||.|||.||||.|||||  |.||  |.||  ||.|  ||.|||..|||.
BL03031___yfh    150 ACCGTGGCGATTCATTTA--TATC--GGGACGGAAAACGGGAAAAAGAAG    195

BSNT_01411        91 CTCATCAATAC-----ATTT----GCAGCGTTCTCTATGAA-ATC-CAAG    129
                     |      ||.|     ||||    ||.|||||     |.|| |.| ||||
BL03031___yfh    196 C------ATGCCGACAATTTAAAAGCGGCGTT-----TAAAGAGCTCAAG    234

BSNT_01411       130 CCGGATATGACAGAGGAA-AAGCTTCAAAATTTCAAAAA---CACACTTG    175
                     |||.|||||   .||||| ||    ||||   ||||.||   ||     |
BL03031___yfh    235 CCGAATATG---CAGGAAGAA----CAAA---TCAATAAGTTCA-----G    269

BSNT_01411       176 GG-----------CGCGTTCCGGGATTTCTCCTCGTCGTGTTTCG--GGA    212
                     ||           .|||||||||..||||||.||||  |.||..|  .||
BL03031___yfh    270 GGAGCATATTCTCAGCGTTCCGGCTTTTCTCTTCGT--TATTATGAAAGA    317

BSNT_01411       213 AGATGAAAACGAAAGAGCGCGGGAC------GACGATTTTGCGGCAACAA    256
                     |||.|||||||||      ||||.|      ||.||||||||.||....|
BL03031___yfh    318 AGACGAAAACGAA------CGGGTCAGACGGGATGATTTTGCAGCCGTCA    361

BSNT_01411       257 GCTCGTTGATTCAAAATCTTCAGCTTCTCGCTTGGGAAAAAGGAATCGGC    306
                     |||..||.||.||||||||.|||||.|||||||||||||||||.||||||
BL03031___yfh    362 GCTGTTTAATCCAAAATCTGCAGCTGCTCGCTTGGGAAAAAGGCATCGGC    411

BSNT_01411       307 ATGGTTTGGAAAAGCGGAAAAATCCTTTATGACAAAGAAGTCCATCAGGC    356
                     |||||.|||||||||||..||.|.||.|.|.|..||..|.|.|| |||| 
BL03031___yfh    412 ATGGTATGGAAAAGCGGGGAAGTTCTCTCTCATGAAACACTGCA-CAGG-    459

BSNT_01411       357 CTTT----GGTTTGCAGGATAATGAGCGTTTCGCCGCTATCATACAAACG    402
                       ||    ||..||.||....||||||...|.||.|||.||.|.||.|..
BL03031___yfh    460 --TTAATGGGACTGAAGCGCGATGAGCAGGTAGCAGCTCTCTTGCAGATC    507

BSNT_01411       403 GGTTATCCTGACGAGGCGCCGGAAGTGAAAAAACGCACA-----CCGATC    447
                     ||.|||||||..||....||.||||.|||     |||||     ||| .|
BL03031___yfh    508 GGATATCCTGCGGAAATTCCTGAAGCGAA-----GCACAGGACGCCG-GC    551

BSNT_01411       448 CGC---------GACCG-GTTCACTGAAATGTAA    471
                     |||         .|||| .||.|||.||      
BL03031___yfh    552 CGCACAGCTTTTTACCGAATTAACTTAA------    579


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