Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01432 and BL03037
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:57
# Commandline: needle
# -asequence dna-align/BSNT_01432___yfhO.1.5803.seq
# -bsequence dna-align/BL03037___yfhO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01432___yfhO-BL03037___yfhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01432___yfhO-BL03037___yfhO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01432___yfhO
# 2: BL03037___yfhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2831
# Identity: 1737/2831 (61.4%)
# Similarity: 1737/2831 (61.4%)
# Gaps: 490/2831 (17.3%)
# Score: 4828.5
#
#
#=======================================
BSNT_01432___ 1 ATGAAAAGAAAACA-------TA-TCATGATCTATGCGGC--------CA 34
||| ||||||||| || |..||||| || ||
BL03037___yfh 1 ATG--AAGAAAACAGTTTTTCTATTTGTGATC------GCAAGCATTGCA 42
BSNT_01432___ 35 GTTTGCTGGTGTCCGTTCTGGCACACGCTTTTTTTGTGAAAGAATGGGCG 84
||||.| |||.|| ||.||..||||||||.||.|.|||||||||
BL03037___yfh 43 GTTTCC--GTGGCC------GCCCATTCTTTTTTTCTGTATGAATGGGCG 84
BSNT_01432___ 85 GAAGGCAGGTATATGACAGGTCCGGGTGACGGGCTTGCGCAAATGATCGT 134
.|.|.|.|.||||||||.||....||.|||||.|||||.|||||||||.|
BL03037___yfh 85 CATGACCGTTATATGACGGGGAACGGCGACGGACTTGCACAAATGATCAT 134
BSNT_01432___ 135 ATTTAAAAAATTATTATTTGACCAATATACACACGGGAATTTTTTCTACA 184
.|||||....||..|.|||||.|||||.|.|||.|||||.||.||.||..
BL03037___yfh 135 TTTTAAGTCGTTTCTTTTTGAGCAATACAAACAAGGGAACTTCTTTTATT 184
BSNT_01432___ 185 ATTATTCATTCGGACTTGGCGGCGGCACATTCAGTCAGCTCGGCTATTAT 234
..|||||.|||||.||.||.|||||||..|.|||.|||||||||||||||
BL03037___yfh 185 CGTATTCTTTCGGTCTCGGGGGCGGCATCTACAGCCAGCTCGGCTATTAT 234
BSNT_01432___ 235 TTTTCTGCGTCTTTTCTTTTTCTTGCTGTATCCGCCGCTGTTT---GGAT 281
||..|..|.||||||.|.||..|.|||..||.|||.||.|||| .|||
BL03037___yfh 235 TTCACGACTTCTTTTGTCTTCATCGCTTCATTCGCGGCCGTTTTTCTGAT 284
BSNT_01432___ 282 GCTTCAAGC-CGTCCAGCTGATCGGAGAAGCGGATACGCTTTTTTGGGCT 330
|| ||| ..|.||..||..|||.||.||||||.|..|.||||||||.
BL03037___yfh 285 GC----AGCTTTTGCATTTGGCCGGGGATGCGGATCCTTTGTTTTGGGCG 330
BSNT_01432___ 331 GAGTCAGCTGTTTTTATCAGTATTTTTAAATTGAGCTTGATCATCTTTA- 379
.||.|.||.||.||.||||||.|..|.||..|.|||.||||||| ||||
BL03037___yfh 331 CAGGCCGCCGTATTCATCAGTGTCATCAAGCTCAGCCTGATCAT-TTTAG 379
BSNT_01432___ 380 CGTCCGCTTCTGTTTTTCATTA-----TCTTATTAAGCACAGGGCGGCAT 424
||.|.||.|.|| |.||| |.|..|.||..|||.|...||..
BL03037___yfh 380 CGGCAGCGTATG-----CGTTAAACGGTATGGTGAAAAACAAGCTTGCCG 424
BSNT_01432___ 425 CGTTCACGGGAGCCGTGTTATACGGCGTCTCAATTATTTATTTCCGTCAC 474
|.||.|||||.||.||.||.||.|||...||..|.||.||||||.|.|||
BL03037___yfh 425 CCTTTACGGGTGCGGTTTTGTATGGCACATCGGTAATCTATTTCAGGCAC 474
BSNT_01432___ 475 GAAGCGTATTGGGAATTTTTCACCGATACAATGGTTTGGCTTCCGCTGCT 524
...|.||..|||||||||||||.|||..|.|||.|.|||||.||||||||
BL03037___yfh 475 ACGGTGTTCTGGGAATTTTTCAGCGACGCCATGCTGTGGCTGCCGCTGCT 524
BSNT_01432___ 525 TGT-GCTTGGCGCAGAAAAAATTATTAGAGAGCGGCGTCCGGCGTGGTTT 573
||| || .||.||.||.|||.|.||.|||||...|||..|.||...||||
BL03037___yfh 525 TGTCGC-CGGAGCTGAGAAAGTCATCAGAGAAAAGCGGACAGCACTGTTT 573
BSNT_01432___ 574 ATCGTTGCGTGTTCGCTGACGTTAATCAACAATTTTTACTTTGCATACAT 623
||....||.|||||..|||||.|.|||||.||.|||||||||||.||.||
BL03037___yfh 574 ATTACCGCTTGTTCTTTGACGCTGATCAATAACTTTTACTTTGCCTATAT 623
BSNT_01432___ 624 AAACCTTATATTCATCGGAATCTATGTGCTGTTCAGATGGCTGATTAGTT 673
.|||.|.||.|||||.|..||||||.|..|.|||.|.||||||||.||..
BL03037___yfh 624 CAACTTGATTTTCATTGCGATCTATATCATCTTCCGCTGGCTGATCAGGC 673
BSNT_01432___ 674 TGGAACC---ACATGAAGAGAAAAGATGGATTCAAATCAGATTATTTCTC 720
|.||.|| |.|.||.|.|...||.||||..|||.|||||.|.||...|
BL03037___yfh 674 TTGACCCGGAAAAGGAGGCGCCGAGGTGGAAACAATTCAGAATGTTCGCC 723
BSNT_01432___ 721 GTTTCAGGCTTCATTTCTTTTGGCATCAGTGCGGCGGCGTTTGTGCCGGT 770
|.|||||||.|.||||||||.||.|||||.|||....|.||||||||.|.
BL03037___yfh 724 GCTTCAGGCCTGATTTCTTTCGGAATCAGCGCGATTTCCTTTGTGCCTGC 773
BSNT_01432___ 771 AGTATACGGTTTTTTAAACAACCTGCGCCCTCCATACAGCCAGAAAATAG 820
|||.|||||.|||||||||||..||||.||.||.||...|||| |
BL03037___yfh 774 AGTTTACGGCTTTTTAAACAATTTGCGGCCGCCGTATGACCAG------G 817
BSNT_01432___ 821 -AGTGGCTCAATTTCGAT------GATAATATCTTATTTTCGAGCCGGAT 863
.||.|||..| |.|||| ||.||.||..|.|||||.|||||.||
BL03037___yfh 818 CTGTCGCTGTA-TACGATCTGACGGACAACATTCTGTTTTCCAGCCGCAT 866
BSNT_01432___ 864 CATCATTG-TGCCGGCCGCTTTTCTGCTGTTTTTGTT--TATGATTTCTT 910
..|| ||| |||||||.|..|||.|||||||.||||| .|| ||||.|
BL03037___yfh 867 TGTC-TTGCTGCCGGCTGTCTTTATGCTGTTCTTGTTCGCAT--TTTCCT 913
BSNT_01432___ 911 TTTACAAAAACCGTGT-----GTTTCGTCTCTTTGCCGGGTTGAGCCTGC 955
|.||.||||| | |||..|.||.||||||....|.||..|||
BL03037___yfh 914 TCTATAAAAA-----TAAAACGTTCAGGCTGTTTGCCTCAATCAGTGTGC 958
BSNT_01432___ 956 TGTTTATTCTGTTTCATTTCAGTCCGTATGCGGCAAGCGTCTTTAACGGT 1005
||.||.|.||..|.||||.|||.|||..|||||||||||..||.||||||
BL03037___yfh 959 TGCTTGTGCTTCTGCATTACAGCCCGCTTGCGGCAAGCGCATTCAACGGT 1008
BSNT_01432___ 1006 TTTTCCGCCCCGCAAAACCGGTTTGAATATATTCTGGCCTTTACCATTGC 1055
||.|||||.|||||.|||||.||||||||..|.||.||.|||||.||.|.
BL03037___yfh 1009 TTCTCCGCTCCGCAGAACCGCTTTGAATACCTGCTCGCTTTTACGATCGG 1058
BSNT_01432___ 1056 GGGAGCAGCTGCGGCTGGTTTGTCACAGCTGTCTGAATTGAAA------- 1098
||||||.||.||.||.|| ..||.|.|||.|||||
BL03037___yfh 1059 GGGAGCGGCGGCCGCAGG---------AATGACCGAACTGAAAAACATCA 1099
BSNT_01432___ 1099 --CGGAAAGA---------------ACTGCTCCCGGCCGCAGCTGTCGTC 1131
|||||||| .||||| ||||.|.
BL03037___yfh 1100 GGCGGAAAGAGATGATATGGTCTATCCTGCT------------TGTCCTT 1137
BSNT_01432___ 1132 CTGCTT------------CTTT---------ACTTG----TATCA--TAT 1154
|||.|| .||| ||||| ||||| |||
BL03037___yfh 1138 CTGGTTTATATCGCGGTCATTTGGCGGAAAGACTTGGATTTATCACTTAT 1187
BSNT_01432___ 1155 TCAAAGGTATAAGCTCGATATATGGAAGCCTGCGAATGAAAGTATTCTAT 1204
.|||| ||.|.||| |||.|..
BL03037___yfh 1188 GCAAA----------------ATTGGAGC--------------ATTATTG 1207
BSNT_01432___ 1205 TGCTCTTACTCATGACAATCGCAGCCTTGTTTGCTGCAGC----TTTTGC 1250
||||..|..||.|||||||| |||.|.|||.|.||.|| |||
BL03037___yfh 1208 TGCTTCTGTTCCTGACAATC---GCCATATTTACGGCGGCGGGGTTT--- 1251
BSNT_01432___ 1251 GAAAAAACGGGCAAAAATGGC-------TGTGTACGGTATAATCATTCTT 1293
.||.|.| |.||||.|| |.||.||| |...||||.|.
BL03037___yfh 1252 CAATATA-----AGAAATCGCAGCTTTTTTTGCACG---TCTGCATTTTA 1293
BSNT_01432___ 1294 TCTTCG-CTGT--TTGTCGCCAACTCCTATCAAAAATACGCGCTCTCAGA 1340
|..||| |.|| |.||.||.|||.|.||||||||.||.|..||.||.||
BL03037___yfh 1294 TTATCGTCCGTCCTCGTGGCGAACACGTATCAAAAGTATGTTCTGTCTGA 1343
BSNT_01432___ 1341 ---AGGCGGCGATTTGGATAGTGTGAC-AAAAGAATATCTTACAAGTGAG 1386
|.||||| ||| .|.|..||.|| ||||| .|||.|.||.||..|.
BL03037___yfh 1344 GTCAAGCGGC-ATT--AAAAACGTCACGAAAAG-CTATTTGACCAGCAAT 1389
BSNT_01432___ 1387 GAATACAGAGGGCG-GGAATCA--------TCTGAGCTCATCAGACGTTT 1427
||.|||| |.|||| .||| || || ||.|.|| ||.||
BL03037___yfh 1390 GAGTACA-ATGGCGAAGAA-CAGCGCCGCCTC----CTGAACA-ACATT- 1431
BSNT_01432___ 1428 ACAGAAGGAAGACGA------TGATCCGCT---CATGAGAATCGATTGGA 1468
.||| ||||||| ||| ||.|| || ||.|||||.||||
BL03037___yfh 1432 --CGAA--AAGACGATAAGGGTGA-CCCCTATACA--AGGATCGACTGGA 1474
BSNT_01432___ 1469 TGAACGGGGTCCGCAATAATACGCCAATCATTTACGGA-TTTAATGGCTT 1517
|||||||.||||||||.|||||.||..|.||..| ||| |||||.|||||
BL03037___yfh 1475 TGAACGGCGTCCGCAACAATACTCCGCTGATGCA-GGATTTTAACGGCTT 1523
BSNT_01432___ 1518 CAGCGCGTATTCCAGCATTTTAAACAAAGATCTGCTGGCCTTCTATTGGA 1567
||||||.||.||.||||||.|.||....|||||.||....||.||||||.
BL03037___yfh 1524 CAGCGCCTACTCAAGCATTCTCAATCGCGATCTTCTTCTGTTTTATTGGG 1573
BSNT_01432___ 1568 ATGA--TTTAAGCATCGATATGGGCAGGGAAAGCGTCAGCCGTTACGCGT 1615
|.|| ||.|| |||||||||||.|||||||||||||||||.|||||.|
BL03037___yfh 1574 AAGACCTTCAA--ATCGATATGGGAAGGGAAAGCGTCAGCCGCTACGCAT 1621
BSNT_01432___ 1616 CATTGGGAGACAGGGCGAATTTATACAGCCTGCTTTACGGCAAATATTAT 1665
|..||||.|||.||||.||.||.|||||.|||||.||||||||.|||||.
BL03037___yfh 1622 CGATGGGCGACCGGGCCAACTTGTACAGTCTGCTGTACGGCAAGTATTAC 1671
BSNT_01432___ 1666 ATGACCGAAAAA-ACAAACGAAGCCAGCGTCCCGTACGGCTTCA---AAA 1711
|||||.|||||| || ||.|..||||..||.||||||||.||.| |||
BL03037___yfh 1672 ATGACGGAAAAAGAC-AATGCCGCCAATGTTCCGTACGGGTTTATTCAAA 1720
BSNT_01432___ 1712 AGCATTTAGAAACAGAGCATTATGCAGTTTATGAGAATCAGTACATGCTT 1761
.|.|| |||.|||||||.||..||||||||.|.||..|.|||| .|||
BL03037___yfh 1721 CGGAT---GAATCAGAGCACTACACAGTTTATAAAAACAAATACA-CCTT 1766
BSNT_01432___ 1762 CCATTCGTTAA----AACAGCG-----GATGCCATATACAGCGAAAG--T 1800
.| ||||.| .||.||| |.|| |.|||.|..|||| |
BL03037___yfh 1767 GC---CGTTTATCCGGACGGCGCGAACGTTG---TTTACGGAAAAAGCTT 1810
BSNT_01432___ 1801 GAGCTGGACCGAT-TGCCCGCTCTTGCGAAAGAACAGGCGATGCTGAAAG 1849
.|| |.||| .|||.|.|.|.|||...||.||.||||||||..|||
BL03037___yfh 1811 TAG-----CAGATGCGCCAGTTTTAGCGCGGGAGCATGCGATGCTTGAAG 1855
BSNT_01432___ 1850 GAATCAT--------AT-----TAAAAGATCCATCAGGAAAAACGGAGCA 1886
|||||.| || ||| .|||||| |||||
BL03037___yfh 1856 GAATCGTGCTTGAGAATGGCGGTAA----------CGGAAAA---GAGCA 1892
BSNT_01432___ 1887 GACACCAAAACAGTCC-AATTTGATCACCAAGTCGGACATTACCGC--AA 1933
|.|.|| .|.|..||| .|||||||.|...||.||.| || ||
BL03037___yfh 1893 GCCGCC-GAGCGTTCCTGATTTGATGAAGCAGACGAA-------GCTGAA 1934
BSNT_01432___ 1934 AACAAGCCCAG---------TATCAAAACGGGCTGCTAACCGTAACTGGA 1974
|| ||.|| |||||.|||||..|.||...|||.||.|..
BL03037___yfh 1935 AA----CCGAGGGGGCGAGCTATCATAACGGCTTCCTCGACGTCACCGCT 1980
BSNT_01432___ 1975 GAAAACGGAGGAGAGCTGATC-ATCAC---CCCGAAACAGCCATCATCCG 2020
||||||||||| .||| |||.| |||||| .|
BL03037___yfh 1981 GAAAACGGAGG------CATCGATCTCATTCCCGAA------------GG 2012
BSNT_01432___ 2021 C-----TCC------GGGAGACTACTATGTCAGCTTTTATTTGAAAAGCA 2059
| ||| .||.|||||.||||||.|.||||||||.||||||.
BL03037___yfh 2013 CGGGGTTCCAAAAGAAGGCGACTATTATGTCGGATTTTATTTAAAAAGCC 2062
BSNT_01432___ 2060 AAGCAAAAGA-CAG------AGGATTTGCGTTAAAGGTAAATGATTATGT 2102
..|||||||| ||| | |.||||| |||.|||||||||||
BL03037___yfh 2063 TTGCAAAAGACCAGTTCTTCA--ACTTGCG-----GGTCAATGATTATGT 2105
BSNT_01432___ 2103 CACAACAAGGAAATCGAACAAATCGATATATAAAACCGGAGTAAATAATA 2152
.|||.||||.||.||.|||.|.|||||.||.|||||.||.||..|..||.
BL03037___yfh 2106 AACATCAAGAAAGTCAAACCAGTCGATTTACAAAACAGGTGTTTACGATT 2155
BSNT_01432___ 2153 TAACGGTAAGAGTGCCTAAATCAGGCCATATCTCAATCAATCTTCCGAAA 2202
|||||.|.||.|||||.|||.|||...|.||.|||||||..||.||.|||
BL03037___yfh 2156 TAACGATCAGGGTGCCGAAAACAGATAAAATTTCAATCAGGCTGCCAAAA 2205
BSNT_01432___ 2203 GGAACCTAT------GAGC---TGAGAAACATAGC-GCTCTATGAAGAAA 2242
||.|..||| ||.| |||| || ||.|.|.||||
BL03037___yfh 2206 GGGAAATATCAATTGGACCATTTGAG-------GCTGCACCAGGAAG--- 2245
BSNT_01432___ 2243 ATTACCAAACGCTGAAAAACGCTGTAATGCAAAATAAAACAGAGAAAGCA 2292
|.||.|||..|||||||||.||.| ..||.||| ||||| |...||.
BL03037___yfh 2246 ACTATCAATTGCTGAAAAAAGCCG--CCGCCAAA-AAAAC---GCCGGCC 2289
BSNT_01432___ 2293 GACAAACTGAATTGGAACAAAAATCGACTG------ACCTTTGCCTATCA 2336
|.|.|..||||.|||...||.||||.|.|| |.|||||.|.||||
BL03037___yfh 2290 GCCGACTTGAACTGGCGGAACAATCAAGTGTCCATCAGCTTTGACAATCA 2339
BSNT_01432___ 2337 TCTGTCAAA---AGACCAGTACATCATGCTTCCGATCCCATATGAAAAAG 2383
||| |||||..|||||..||||.|||.|.||.||.|||||||
BL03037___yfh 2340 ------AAACGGAGACCGCTACATGGTGCTGCCGGTTCCGTACGAAAAAG 2383
BSNT_01432___ 2384 GCTGGGA----GCTGAAGATCAACGGAAAAACACAGAA--GATCGAAAAA 2427
||||||| .||| |.|||||||||||.|| || |.|| ||||.
BL03037___yfh 2384 GCTGGGAAGTCACTG----TAAACGGAAAAACGCA-AACCGTTC-AAAAG 2427
BSNT_01432___ 2428 GCGGATTATGCTTTTATAGG---CTTCAAGGCGCAAAAGGGAGACAATCA 2474
||..||||.||.|||||.|| |..|| .||.|||||||| |.||..|
BL03037___yfh 2428 GCAAATTACGCGTTTATTGGAATCCCCA--TCGAAAAAGGGA-AGAACAA 2474
BSNT_01432___ 2475 CATTGAGCTGAC----TTACTATCCGCCATACTTCAAA---ATATCGGCG 2517
||| |.|.| |||.||.|||||.||||||||| |..|.||||
BL03037___yfh 2475 CAT----CCGTCTCGTTTATTACCCGCCGTACTTCAAAGCTACCTTGGCG 2520
BSNT_01432___ 2518 ---------ATCATATCTC-TCGTC--AGTCTGCTGCTTGCTGTTTTCTA 2555
|||| ..||| ||.|| |.||||.|.| .||
BL03037___yfh 2521 GTTACAGTCATCA-GCCTCATCATCGGAATCTGGTAC-AGC--------- 2559
BSNT_01432___ 2556 TATAAGACGTAAAAAGCCCGGCTCTATATAG 2586
|.|||..|.|||||||..||||||..|
BL03037___yfh 2560 -AGAAGGAGAAAAAAGCTTGGCTCTTAA--- 2586
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