Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01434 and BL03038

See Amino acid alignment / Visit BSNT_01434 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_01434___yfhQ.1.5803.seq
#    -bsequence dna-align/BL03038___yfhQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01434___yfhQ-BL03038___yfhQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01434___yfhQ-BL03038___yfhQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01434___yfhQ
# 2: BL03038___yfhQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1154
# Identity:     811/1154 (70.3%)
# Similarity:   811/1154 (70.3%)
# Gaps:         112/1154 ( 9.7%)
# Score: 2833.0
# 
#
#=======================================

BSNT_01434___      1 ATGAACGTACTTGAAGACAAATTAAAACAAAAAGACATACAGCAATTTCG     50
                     ||||..|..||..||.|.||||||.|.||||||.||||..|.|||||||.
BL03038___yfh      1 ATGATGGATCTGCAAAAGAAATTAGAGCAAAAAAACATCAAACAATTTCA     50

BSNT_01434___     51 CGATGATTTAATCTCATGGTTTGAACGAGAGCAGCGCGTTTTGCCGTGG-     99
                     .||.||||||||.||.||||.|||.|.|||..|.||.|.|.||||.||| 
BL03038___yfh     51 AGAAGATTTAATTTCTTGGTATGAGCAAGAAAAACGGGATCTGCCTTGGC    100

BSNT_01434___    100 ----AGAGAG-GACCAAGATCCATATAAGGTGTGGGTATCTGAAGTGATG    144
                         |||.|| |||      ||.||||||||||||||.||.|||||.|||
BL03038___yfh    101 GCTCAGACAGCGAC------CCTTATAAGGTGTGGGTGTCGGAAGTAATG    144

BSNT_01434___    145 CTGCAGCAAACGAGAGTAGAGACAGTGATTCCTTACTTTCTCCGGTTTGT    194
                     ||.|||||.||||||||.||.||.||||||||||||||...|...|||.|
BL03038___yfh    145 CTTCAGCAGACGAGAGTGGACACGGTGATTCCTTACTTCAACAACTTTAT    194

BSNT_01434___    195 GGAACAATTCCCGACAGTGGAAGCGCTCGCTGATGCTGATGAAGAAAAGG    244
                     .|||.|.||.|||||.|||||||||||||||||.||.||.||||||||.|
BL03038___yfh    195 CGAAAAGTTTCCGACCGTGGAAGCGCTCGCTGAAGCCGACGAAGAAAAAG    244

BSNT_01434___    245 TGCTGAAAGCATGGGAAGGGCTCGGCTATTATTCGCGAGTCAGAAACCTG    294
                     ||||.|||||.||||||||.||.||.||.|||||..|.||..|.|||.||
BL03038___yfh    245 TGCTTAAAGCCTGGGAAGGACTGGGATACTATTCAAGGGTTCGGAACTTG    294

BSNT_01434___    295 CAAAGCGCGGTAAAAGAAGTGAAACAGGA---ATACGGCGGCATTGT---    338
                     ||.|||||.||.|..|||||   .||.||   ||||||.||..|.||   
BL03038___yfh    295 CAGAGCGCTGTCAGGGAAGT---TCACGAACGATACGGGGGTGTGGTCCC    341

BSNT_01434___    339 TCCTCCAGACGAGAAAGATTTTGGCGGGTTAAAAGGCGTCGGCCCTTATA    388
                     ||||.||.|.|||   ||.||.|||.|.||||||||||||||||||||||
BL03038___yfh    342 TCCTTCAAAAGAG---GAATTCGGCAGCTTAAAAGGCGTCGGCCCTTATA    388

BSNT_01434___    389 CAAAGGGAGCGGTGCTCAGCATTGCCTACAATAAACCCATTCCCGCGGTT    438
                     |||..||.||||||||.|||||.|||||||||.|.||..|.||||||||.
BL03038___yfh    389 CAAGAGGCGCGGTGCTGAGCATCGCCTACAATCAGCCGGTCCCCGCGGTA    438

BSNT_01434___    439 GACGGAAATGTGATGCGTGTCATGTCCAGGATTCTATCTATTTGGGATGA    488
                     |||||||||||.|||||.||||||||..|||||||.||..|.||||||||
BL03038___yfh    439 GACGGAAATGTCATGCGGGTCATGTCACGGATTCTTTCCGTATGGGATGA    488

BSNT_01434___    489 TATTGCCAAACCAAAAACAAGAACGATCTTTGAA------GACGCCATAC    532
                     ||||||.||.||.|||||.|.|||..|.||||||      |.||      
BL03038___yfh    489 TATTGCAAAGCCTAAAACCAAAACCCTGTTTGAAAAAATTGTCG------    532

BSNT_01434___    533 GAGCTTTTATTTCCAAAGAAAAACCATCTGAATTTAATCAGGGCTTGATG    582
                     .|||.||||||||..|.||||||||.||.||.|||||.|||||..|||||
BL03038___yfh    533 AAGCGTTTATTTCTGAGGAAAAACCGTCCGAGTTTAACCAGGGGCTGATG    582

BSNT_01434___    583 GAGCTTGGAGCCTTGATCTGTACGCCAAAATCACCCTCATGCCTGCTTTG    632
                     |||||.||.||..|.|||||||||||.|||||.||.||||||||.||.||
BL03038___yfh    583 GAGCTGGGCGCTGTCATCTGTACGCCGAAATCGCCATCATGCCTTCTCTG    632

BSNT_01434___    633 CCCGGTTC-AGCAGCATTGCTCAGCATTTGAAGAAGGCACTGAACGGGAG    681
                     ||||||.| || ||||.||.||.||.||||.|||||||..||||...|||
BL03038___yfh    633 CCCGGTCCGAG-AGCACTGTTCTGCTTTTGCAGAAGGCTGTGAAAAAGAG    681

BSNT_01434___    682 CTTCCGGTAAAAAGCAAAAAGAAAAAGCC--CGGGATCAAAACCATGGCC    729
                     ||||||||.|||||||||||||||||.||  |||  |.||||||.|.||.
BL03038___yfh    682 CTTCCGGTTAAAAGCAAAAAGAAAAAACCTTCGG--TAAAAACCCTTGCA    729

BSNT_01434___    730 GCGATCGTACTGACTGATGAAGACGGACAAGTGTATATCCACAAACGGCC    779
                     ||..||||.||||||||||||||.|||.|..|.||||||||.|||.|.||
BL03038___yfh    730 GCTGTCGTCCTGACTGATGAAGAAGGATACATCTATATCCATAAAAGACC    779

BSNT_01434___    780 GTCTAAAGGTTTGCTCGCCAACCTGTGGGAATTTCCGAATCTTGAAACAC    829
                     |.|...||||.|..|.||.|||||.||||||||.||.||....|||||.|
BL03038___yfh    780 GGCATCAGGTCTTTTGGCAAACCTTTGGGAATTCCCAAACACAGAAACGC    829

BSNT_01434___    830 AAAAAGGGATCAA-AACTGAGCGTGAACAGCTCATTGC----TTTCTTAG    874
                     |.|||||..|.|| .|| |||||.||.||||   ||||    ||  ||.|
BL03038___yfh    830 AGAAAGGCCTGAAGTAC-GAGCGCGAGCAGC---TTGCGGCGTT--TTTG    873

BSNT_01434___    875 AAAACGAATATGGC----ATACAAGCTGATATCAGTGATCTGCAAGGTGT    920
                     |||  |||.| |||    |||.|||||||.|||.||...||..||||.||
BL03038___yfh    874 AAA--GAAGA-GGCCGGAATAGAAGCTGAAATCGGTCCGCTCGAAGGAGT    920

BSNT_01434___    921 AGTCGAGCATGTTTTCACCCACCTGGTATGGAATATTTCAGTGTTTTTCG    970
                     .||.||||||||.||.||.|||||.||.|||||.|||||.||.|||||||
BL03038___yfh    921 CGTAGAGCATGTGTTTACACACCTTGTCTGGAACATTTCTGTCTTTTTCG    970

BSNT_01434___    971 GTAAAGTAAAACAAGTGTCGGAT--ACCAG------CA-AGCTGAAAAAA   1011
                     |.||        ||.|.|| |||  |||.|      || |..|.|||||.
BL03038___yfh    971 GGAA--------AACTCTC-GATCAACCGGATGATTCATACTTTAAAAAG   1011

BSNT_01434___   1012 GTAACGAAAGAAGAGCTCGAACAATTTGCGTTCCCGGTATCACATCAAAA   1061
                     ||.||||||||||||||.|...|||..||.||||||||.||.|||||.||
BL03038___yfh   1012 GTCACGAAAGAAGAGCTTGCTGAATACGCCTTCCCGGTTTCGCATCAGAA   1061

BSNT_01434___   1062 AATCTGGAAGATG-----GCAGTAGAAGCAGCCGCCATCTCGGCTGCTCC   1106
                     |||.|||||.|||     |.|.|||                         
BL03038___yfh   1062 AATATGGAATATGTATATGAAATAG-------------------------   1086

BSNT_01434___   1107 GTAA   1110
                         
BL03038___yfh   1086 ----   1086


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