Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01439 and BL03041

See Amino acid alignment / Visit BSNT_01439 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_01439.1.5803.seq
#    -bsequence dna-align/BL03041___ygaB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01439-BL03041___ygaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01439-BL03041___ygaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01439
# 2: BL03041___ygaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 329
# Identity:     163/329 (49.5%)
# Similarity:   163/329 (49.5%)
# Gaps:         100/329 (30.4%)
# Score: 453.0
# 
#
#=======================================

BSNT_01439         1 ATGATTAAAGGAGGAAATGTTTATACTTTCATCAGGCTGAAGGAGGAACC     50
                                                                       
BL03041___yga      0 --------------------------------------------------      0

BSNT_01439        51 GATGACCGAATTTGAAAAGCTGGT--AAGTGAACAGATGAAAACGATGGA     98
                      |||.|.|||||||||||..||||  |.|.|  ||||||.|.|..|||||
BL03041___yga      1 -ATGCCGGAATTTGAAAATTTGGTTCAGGGG--CAGATGGAGATTATGGA     47

BSNT_01439        99 TAAGCTTCTCGATCTCCAATCAGAGCTCGACCGCTGCAAACAAATTGAGG    148
                     ||||||..|..||||.|||.|.|||.|.||..|.|||.|..|||||||..
BL03041___yga     48 TAAGCTGTTGTATCTGCAAGCGGAGATTGAAAGATGCCAGAAAATTGAAA     97

BSNT_01439       149 CGGAACT-CCGGCATTTGGAAAGGGATGCAAGG--CTGCGT---GGGATT    192
                     ..||||| .|.||..|||.||||      ||.|  |.||.|   ..|||.
BL03041___yga     98 AAGAACTGGCTGCCCTTGAAAAG------AAAGCCCAGCTTTTATCGATC    141

BSNT_01439       193 CAGGCTGAAATTGCGGTAAAACGGAAACACCTTGCCGATATACAGGATAT    242
                     |.||..||.||..|....||.||||||.|.|||||..|.||.||||||.|
BL03041___yga    142 CGGGAAGATATATCCCAGAAGCGGAAAGATCTTGCTCAGATTCAGGATTT    191

BSNT_01439       243 GTTTCAAAAGCAGACAGAGCAGGTCATTC--GTTCAT------ATCGCAG    284
                     |||.|||||||||||.||||||||.||||  |.|.||      ||||..|
BL03041___yga    192 GTTCCAAAAGCAGACGGAGCAGGTGATTCAGGCTTATCAAAGAATCGAGG    241

BSNT_01439       285 C-TCAGAAAAGCCGTCTTCCTTTGTGTAG    312
                     | |.|                        
BL03041___yga    242 CATGA------------------------    246


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