Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01442 and BL03043
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_01442___ygaD.1.5803.seq
# -bsequence dna-align/BL03043___ygaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01442___ygaD-BL03043___ygaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01442___ygaD-BL03043___ygaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01442___ygaD
# 2: BL03043___ygaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1765
# Identity: 1299/1765 (73.6%)
# Similarity: 1299/1765 (73.6%)
# Gaps: 44/1765 ( 2.5%)
# Score: 4614.0
#
#
#=======================================
BSNT_01442___ 1 GTGGGGGTTATGAAACGCTACATGCAATTCGTCAAACCTTATAAGAAGCA 50
||||||||.||.|.|.|.||||||.||||.||.||.||.|||||...|.|
BL03043___yga 1 GTGGGGGTAATCAGAAGGTACATGGAATTTGTGAAGCCGTATAAATGGAA 50
BSNT_01442___ 51 AATTTTCGTT---ACAGTGTTAATCGGGATCGTAAAATTCTCCATTCCGC 97
|| ||||| ||.||.||||||||.||..|.|||||.||.|||||||
BL03043___yga 51 AA---TCGTTTTGACGGTTTTAATCGGTATTATTAAATTTTCTATTCCGC 97
BSNT_01442___ 98 TTGCTC-TCCCATTGCTTCTGAAGTACGTAGTTGACGACATTATTCAAGG 146
||.|| ||||..|.||.|||||.|||||.||.||||||||.||.||.||
BL03043___yga 98 -TGGTCATCCCGCTTCTGCTGAAATACGTCGTGGACGACATCATCCAGGG 146
BSNT_01442___ 147 AGGCGGCACGGC-CAGTGACAAAACCACGTCATTGTTCACGATTATGGCG 195
..||||.||.|| .|| ||.|||||..|..||||.||||.|.|.||||||
BL03043___yga 147 GAGCGGGACTGCTGAG-GAAAAAACATCCACATTATTCATGGTAATGGCG 195
BSNT_01442___ 196 ATCATGTTCGCCTTATTTTTAATTTTGCGCCCGCCTGTTGAATATTACCG 245
.|.|||||||||.|.|||||..|..|.||.||||||||.|||||||||||
BL03043___yga 196 GTTATGTTCGCCATTTTTTTGGTGCTTCGGCCGCCTGTCGAATATTACCG 245
BSNT_01442___ 246 GCAATATTTTGCCCAGTGGACTGCCAGCAAGGTGCTTTATGATATAAGAG 295
.||.|||||.||.||||||||.||.||||||||||||||||||||.||.|
BL03043___yga 246 TCAGTATTTCGCGCAGTGGACGGCAAGCAAGGTGCTTTATGATATCAGGG 295
BSNT_01442___ 296 CTAAGCTGTTTGACCATATACAAAAACTGAGCCTACGTTTTTACGCGAAT 345
..|||||.||||..|||||||||||.||||||||..|.|.|||.|||||.
BL03043___yga 296 ACAAGCTTTTTGCGCATATACAAAAGCTGAGCCTCAGGTATTATGCGAAC 345
BSNT_01442___ 346 ACAAGAACAGGGGAAGTCATTTCCCGAGTGATTAATGATGTAGAACAAAC 395
||..|..||||.|||.|.|||||..|.||.||.||||||||.||.||.||
BL03043___yga 346 ACCCGCGCAGGAGAAATTATTTCAAGGGTCATCAATGATGTCGAGCAGAC 395
BSNT_01442___ 396 AAAGGATTTCGTCATCACAGGGCTTATGAATATATGGCTCGATATGCTGA 445
.|||||.||||||||||..||..|.||||||.|||||||.||..||.|||
BL03043___yga 396 GAAGGAATTCGTCATCATCGGATTGATGAATGTATGGCTTGACGTGATGA 445
BSNT_01442___ 446 CGATTTTGATTGTAATCTCGATCATGCTCACACTGGACGTTAAATTAACG 495
|||||||.||.|..|||.|.||.|||.|.||..|||||||.||..|.|||
BL03043___yga 446 CGATTTTTATCGCCATCGCCATTATGATGACGATGGACGTGAAGCTGACG 495
BSNT_01442___ 496 CTGATCTCTATCGTTTTATTCCCATTATACGGAATATCAGTGAAGTATTT 545
||.||.||.|||||..|.||.||..|.||||||.|.||.||.||.|..||
BL03043___yga 496 CTTATTTCGATCGTGCTGTTTCCGCTTTACGGACTGTCTGTTAAATTCTT 545
BSNT_01442___ 546 TTACGGCCGTTTACGAAAGCTGACAAGGGAGCGCTCACAGGCTCTTGCTC 595
.||||||.|..|..||||||||||.||.||.||.||.||.||.||.||..
BL03043___yga 546 CTACGGCAGGCTCAGAAAGCTGACGAGAGAACGTTCCCAAGCGCTGGCCG 595
BSNT_01442___ 596 AAGTGCAGGGGCATTTGCACGAACGCATTCAAGGCATGCCTGTCATCAGA 645
||||||||||.|||.|.||.|||.|..||||.||.||||||||||||||.
BL03043___yga 596 AAGTGCAGGGCCATCTTCATGAAAGGGTTCAGGGAATGCCTGTCATCAGG 645
BSNT_01442___ 646 AGCTTTGCGATAGAAGATCATGAACAGGCTCAATTTAATGAGAAAAACGG 695
||.||||||||.||.|||.|||||||....||||||.||.|..|.|||||
BL03043___yga 646 AGTTTTGCGATCGAGGATTATGAACAAAAGCAATTTGATCACGAGAACGG 695
BSNT_01442___ 696 GCATTTCTTAGATAAAGCCATCCGCCACACGAATTGGAACGCCAAAACCT 745
|.||||..|.|.||||||.||||||||.|||...|||||.||||||||||
BL03043___yga 696 GAATTTTCTCGGTAAAGCAATCCGCCATACGGCCTGGAATGCCAAAACCT 745
BSNT_01442___ 746 TTGCGGTCGTTAATACCATTACAGATTTGGCGCCGCTCATCGTCATAGCG 795
||||.|||||.|||||..|||||||..|.||.|||||.|||.||||..||
BL03043___yga 746 TTGCCGTCGTCAATACGGTTACAGACCTCGCTCCGCTGATCATCATTACG 795
BSNT_01442___ 796 TGCGCCGGGTATTTTGTCATTAATGG--ACCGCTGACAGTCGGAACAATG 843
...||.||.|||..|||.|||.|.|| || ||.||.||.|||||.|||
BL03043___yga 796 GTTGCAGGTTATCATGTGATTCACGGGAAC--CTTACTGTAGGAACGATG 843
BSNT_01442___ 844 GTCGCGTTTGTCGGATATATTGACAGAATGTACAACCCTGTTAGAAGGCT 893
||.||||||.||||||||||.||..|..|.||||||||..|..|..|.||
BL03043___yga 844 GTGGCGTTTTTCGGATATATCGAACGCCTCTACAACCCGCTGCGCCGCCT 893
BSNT_01442___ 894 GATCAATTCCTCTACAACATTGACACAGTCAATCGCATCAATGGACAGGG 943
||||||||||||.|||||||||||.|||||.||||||||||||||||||.
BL03043___yga 894 GATCAATTCCTCGACAACATTGACGCAGTCGATCGCATCAATGGACAGGC 943
BSNT_01442___ 944 TGTTTGAATTTATTGACGAGCCCTATGAACTCACTGACAAACCAAATGCG 993
||||||||||||||||.||.||.|||||..|.|..||.||.||.|||||.
BL03043___yga 944 TGTTTGAATTTATTGATGAACCGTATGATTTAAAAGATAAGCCCAATGCT 993
BSNT_01442___ 994 ATAAAGGC----CGATCA-----GATTCGCGGAGGAGTGGAGTTTCAAAA 1034
.||||.|| ||||.| |||| ||.||.|||.||||
BL03043___yga 994 GTAAAAGCAGAGCGATTAAAAGGGATT---------GTTGAATTTAAAAA 1034
BSNT_01442___ 1035 CGTTTCGTTTCAATATGAGAA---GGACAAAGAAAAT-ATTCTTCATGAT 1080
||||||.||||||||.||.|| || ||.|||| |||.|.||.|||
BL03043___yga 1035 CGTTTCCTTTCAATACGAAAAATCGG----AGGAAATGATTTTGCAGGAT 1080
BSNT_01442___ 1081 GTATCCTTAAAAGTAAATAGAGGAGAAACTGTAGCTCTCGTCGGCATGAG 1130
.|.||.||.||||...|..|.||.|||||.||.||.||||||||.|||||
BL03043___yga 1081 CTTTCTTTGAAAGCCGAACGGGGCGAAACGGTTGCGCTCGTCGGGATGAG 1130
BSNT_01442___ 1131 CGGAGGAGGAAAATCAACGCTCGTCAGCCTGATCCCAAGATTTTATGATG 1180
||||||.||.|||||.|||||.||||||||.||.||.|||||.||.||||
BL03043___yga 1131 CGGAGGCGGCAAATCGACGCTTGTCAGCCTCATTCCGAGATTCTACGATG 1180
BSNT_01442___ 1181 TAACAAGCGGCAGACTGCTGATTGATGGGACGGATATTCGCGATTATGAA 1230
|..||..|||.||.|||..|||.||.||.|..|||.|.|||||||||||.
BL03043___yga 1181 TCTCAGCCGGAAGCCTGGAGATCGACGGCATCGATGTGCGCGATTATGAG 1230
BSNT_01442___ 1231 GCAAGAAGCCTTCGCAACCAGGTTGGTATGGTGCTTCAGGATACCTTTTT 1280
||..||||||||.|.|||||..|.||.|||||.||.||||||||.|||||
BL03043___yga 1231 GCGCGAAGCCTTAGAAACCAAATCGGCATGGTTCTCCAGGATACGTTTTT 1280
BSNT_01442___ 1281 ATTTAGTGAAACGATTCGGGAAAATATCGCGATCGGCAAGCCTGATGCCA 1330
|||.||.|||.||.|.||.|||||.||..|||||||.||.||.||.||..
BL03043___yga 1281 ATTCAGCGAATCGGTACGCGAAAACATATCGATCGGGAATCCCGAAGCTT 1330
BSNT_01442___ 1331 CCCTTGAAGAGATAATCGAAGCCGCCAAAGCTGCAAATGCCCATGAATTT 1380
|..|.|||||.||.||.|||||.||.||||||||.|||||||||||.|||
BL03043___yga 1331 CGATGGAAGACATCATTGAAGCGGCAAAAGCTGCGAATGCCCATGATTTT 1380
BSNT_01442___ 1381 ATCAT-GAGTTTTCCAGAAGGATATGAGACCCGGGTGGGAGAACGAGGCG 1429
||.|| ||| .|.||..||||.|||||.||...|||.||||||.|.||.|
BL03043___yga 1381 ATTATGGAG-CTGCCGCAAGGCTATGATACAAAGGTCGGAGAAAGGGGAG 1429
BSNT_01442___ 1430 TTAAGCTTTCAGGCGGACAAAAGCAGCGGATCTCAATTGCGCGGGTATTC 1479
|.|||||.||.||.||.|||||.||||||||.|||||.||..||||.|||
BL03043___yga 1430 TCAAGCTGTCCGGAGGCCAAAAACAGCGGATATCAATCGCCAGGGTGTTC 1479
BSNT_01442___ 1480 CTGAAAAATCCGCCGCTCCTCATTTTAGATGAAGCTACATCAGCTCTGGA 1529
|||||.||.|||||||||.|.|||||.||||||||.||.|||||.||.||
BL03043___yga 1480 CTGAAGAACCCGCCGCTCTTAATTTTGGATGAAGCGACGTCAGCGCTTGA 1529
BSNT_01442___ 1530 TTTGGAAAGTGAGCATTACATTCAAGAAGCGATGGACAAACTGGCGAAGG 1579
..|.|||||.|||||.||.||.||.|||||||||||.||.||.|||||.|
BL03043___yga 1530 CCTTGAAAGCGAGCACTATATCCAGGAAGCGATGGAAAAGCTCGCGAAAG 1579
BSNT_01442___ 1580 ATAGAACAACTTTTGTTGTCGCCCACCGTTTATCGACAATCACCCATGCG 1629
|..|.||.||.|||.|.||.||.|||.|..|.|||||.||.|||||.||.
BL03043___yga 1580 ACCGGACGACCTTTATCGTTGCTCACAGACTGTCGACGATTACCCACGCT 1629
BSNT_01442___ 1630 GATAAGATTGTTGTCATGGAAAACGGCAC-AATCATTGAAATCGGAACCC 1678
||.||.||.||||||||.|||||||| || ..||...||||||||.||.|
BL03043___yga 1630 GACAAAATCGTTGTCATCGAAAACGG-ACGTGTCGCGGAAATCGGCACAC 1678
BSNT_01442___ 1679 ATGATGAACTCATGGACTATGAGAGCCAGTACAAGCATTTATTTACCATT 1728
||||.|||||.|||..|...||..|.||.||.|||||||||||.||||||
BL03043___yga 1679 ATGACGAACTAATGAGCCGCGACGGGCACTATAAGCATTTATTCACCATT 1728
BSNT_01442___ 1729 CAAAATTTGAACTAA 1743
|||||.||.||||||
BL03043___yga 1729 CAAAAATTAAACTAA 1743
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