Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01280 and BL03064
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_01280___yflM.1.5803.seq
# -bsequence dna-align/BL03064___nos.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01280___yflM-BL03064___nos.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01280___yflM-BL03064___nos.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01280___yflM
# 2: BL03064___nos
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1153
# Identity: 795/1153 (69.0%)
# Similarity: 795/1153 (69.0%)
# Gaps: 116/1153 (10.1%)
# Score: 2601.0
#
#
#=======================================
BSNT_01280___ 1 TTGGAAGAAAAAGAAATACTCTGGAACGAAGCGAAAGCGTTTATTGCCGC 50
||||||..|.|.|||..|.|.||||..|||||.||.||.||.||.| .||
BL03064___nos 1 TTGGAATCACATGAAGAATTATGGAGGGAAGCCAAGGCCTTCATCG-AGC 49
BSNT_01280___ 51 -ATGCTATCAGGAATTGGGAAAGGAGGAGGAAGTGAAAGACCGTCTCGAG 99
.|||||...||||.||...|||...||.||| |||| |.||
BL03064___nos 50 TCTGCTACGGGGAACTGTCGAAGTCCGAAGAA--GAAA--------CAAG 89
BSNT_01280___ 100 G--------ACATTAAA-----AGTGAAATTGACCTG----ACCGGGAGC 132
| ||||.||| |..||||| |.| |||||.|||
BL03064___nos 90 GATGCGCTTACATAAAATAGATAAAGAAAT----CAGAGAAACCGGAAGC 135
BSNT_01280___ 133 TATGTACATAC----GAAGGAAGAGCTAGAGCACGGAGCGAAAATGGCTT 178
|||..|||||| ||||.|| |.||.||.|||||.|.||||||.|
BL03064___nos 136 TATACACATACATTAGAAGAAA----TCGAACATGGAGCCAGAATGGCGT 181
BSNT_01280___ 179 GGAGAAACAGCAACCGCTGCATCGGCAGATTGTTCTGGAATTCGCTGAAT 228
||||||||||||.|||||||||||||||..||||.|||.|.||.||.|.|
BL03064___nos 182 GGAGAAACAGCAGCCGCTGCATCGGCAGGCTGTTTTGGCACTCTCTTACT 231
BSNT_01280___ 229 GTTATTGA-CAGACGAGACGTCCGGACGAAGGAGGAAGTGCGTGACGCCC 277
||.||.|| || |.|||.|||.|..||..|||..||.|||||.||.||.|
BL03064___nos 232 GTCATCGATCA-AAGAGGCGTTCAAACCGAGGCAGAGGTGCGGGATGCGC 280
BSNT_01280___ 278 TCTTTCACCATATTGAAACCGC---CACCAATAAC---GGCAAAATCAGA 321
|.||.||||||||| |.|| ||.|| ||| ||.|||||||||
BL03064___nos 281 TTTTCCACCATATT----CAGCTTGCAACA--AACGGAGGGAAAATCAGA 324
BSNT_01280___ 322 CCGACCATTACGATTTTCCCTCCGGAAGAGAAGGGTGAAAAGCAAGTCGA 371
|||..|||||||.|||||||.||||||.|.||.||..||||..||||...
BL03064___nos 325 CCGTTCATTACGGTTTTCCCCCCGGAACAAAACGGACAAAAAAAAGTGTC 374
BSNT_01280___ 372 GATCTGGAATCATCAGCTGATCCGGTACGCTGGATATGAGTCAGACGGAG 421
.||.|||||.||.|||||||||.||||.||.||.|||| |.||.|||
BL03064___nos 375 CATTTGGAACCACCAGCTGATCAGGTATGCGGGGTATG----AAACTGAG 420
BSNT_01280___ 422 AAAG----AATCGGCGACCCGGCTTCCTGTTCCCTGACAGCAGCCTGCGA 467
.||| .||||||||.|||||.||.|.....||||||...||.||.||
BL03064___nos 421 CAAGGCGTTATCGGCGATCCGGCGTCATTGGAACTGACAAAGGCGTGTGA 470
BSNT_01280___ 468 AGAGCTCGGCTGGCGCGGAGAGCGAACGGATTTTGACCTGCTGCCGCTCA 517
||.||||||||||...||.||..|.|||..|||||||.|..|||||||..
BL03064___nos 471 AGCGCTCGGCTGGAAAGGCGAAGGTACGCCTTTTGACGTATTGCCGCTTG 520
BSNT_01280___ 518 TTTTTCGCAT-GAAAGGCGACGAACAGCCTGTCTGGTATGAGCTGCCGCG 566
||||||..|| ||..|||| .|..|||||.||||||||||||||.||
BL03064___nos 521 TTTTTCAAATAGATGGGCG----TCCTCCTGTGTGGTATGAGCTGCCTCG 566
BSNT_01280___ 567 TTCACTTGTGATCGAGGTTCCAATCATACATCCGGACATCG-AGGCGTTT 615
|..|.|.||.|..|||||||..||...|||||||||.||.| |||| |
BL03064___nos 567 TGAAATCGTCAAAGAGGTTCGGATTGAACATCCGGAGATTGAAGGC---T 613
BSNT_01280___ 616 GCTGA--TTTGGAGCTGAAGTGGTACGGCGTGCCTATCATCTCTGATATG 663
.|..| |||||.||||||||||||||..||.||.||.||..|.||||||
BL03064___nos 614 TCAAAAGTTTGGGGCTGAAGTGGTACGCTGTACCGATTATAGCCGATATG 663
BSNT_01280___ 664 AAGCTTGAGGTCGGGGGCATTCATTATAATGCCGCGCCATTTAACGGCTG 713
|||||.||.|||||.||.|||||||||||||||||.||.|||||||||||
BL03064___nos 664 AAGCTGGAAGTCGGAGGGATTCATTATAATGCCGCCCCGTTTAACGGCTG 713
BSNT_01280___ 714 GTATATGGGCACGGAGATCGGAGCGAGAAACCTCGCAGATGAAAAGCGGT 763
|||||||||.||.||.|||||||||.|.||||||||.||||.|.|.||.|
BL03064___nos 714 GTATATGGGAACTGAAATCGGAGCGCGCAACCTCGCGGATGCAGACCGCT 763
BSNT_01280___ 764 ACGACAAGCTGAAAAAAGTAGCGTCCGTGATCGGCATCGCCGC-TGATTA 812
|..|...|||..|||||||.||..||.|.||.|| || ||| ||
BL03064___nos 764 ATAATGCGCTCGAAAAAGTGGCAGCCATTATGGG-------GCTTGA-TA 805
BSNT_01280___ 813 C-------AATACGGATT---TATGGAAGGATCAA-GCGCTAGTTGAATT 851
| ||||| || |.|||||.|| ||| |||||.||||||||
BL03064___nos 806 CGGAGCGGAATAC---TTCGCTGTGGAAAGA-CAAGGCGCTTGTTGAATT 851
BSNT_01280___ 852 GAATAAAGCTGTGCTGCACTCGTATAAAAAGCAG--GGTGTCAGCATCGT 899
.||||..||.|||||.|||||.|||||||| || ||.|||||||||||
BL03064___nos 852 AAATACTGCGGTGCTTCACTCCTATAAAAA--AGCCGGCGTCAGCATCGT 899
BSNT_01280___ 900 TGACCATCATACAGCGGCAAGCCAGTTTAAACGGTTTGAAGAACAGGAGG 949
.|||||.|||||.|||||||||||.||.||.|||||.||.||.|||||||
BL03064___nos 900 CGACCACCATACTGCGGCAAGCCAATTCAAGCGGTTCGAGGAGCAGGAGG 949
BSNT_01280___ 950 AAGAAGCGGGCAGAAAGCTGACGGGAGACTGGACGTGGCTGATTCCGCCA 999
..|||||.||.||..||||..|.|.|..|||||||||||||||||||||.
BL03064___nos 950 CTGAAGCCGGAAGGGAGCTTGCAGCAAGCTGGACGTGGCTGATTCCGCCG 999
BSNT_01280___ 1000 ATTTCACCCGCTGCCACTCATATCTTCCACCGCTCCTATGATAACTCAAT 1049
.|.||.||.||.||.||.||||||||.|||.|||..||||| ||.|.||.
BL03064___nos 1000 TTATCGCCGGCAGCGACCCATATCTTTCACAGCTATTATGA-AAATAAAA 1048
BSNT_01280___ 1050 CG-TTAAGCCGAACTATTTTTATCAAGATAAGCCTTA--TGAGTAA---- 1092
|| |.||.|||||.||.||||||||.||.|||||||| | |||
BL03064___nos 1049 CGCTGAAACCGAATTACTTTTATCAGGAAAAGCCTTACCT---TAACAAA 1095
BSNT_01280___ 1092 --- 1092
BL03064___nos 1096 TAA 1098
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