Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05798 and BL03075

See Amino acid alignment / Visit BSNT_05798 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05798___spsC.1.5803.seq
#    -bsequence dna-align/BL03075___spsC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05798___spsC-BL03075___spsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05798___spsC-BL03075___spsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05798___spsC
# 2: BL03075___spsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity:     679/1370 (49.6%)
# Similarity:   679/1370 (49.6%)
# Gaps:         460/1370 (33.6%)
# Score: 1348.5
# 
#
#=======================================

BSNT_05798___      1 ATGGTGCAAAAGAGAAATCATTTTCTCCC-TTACTCATT----GCCGTTA     45
                                     ||.|     |||| |||.|||.|    ..|||.|
BL03075___sps      1 ----------------ATGA-----TCCCGTTAGTCAATTTAAAACGTCA     29

BSNT_05798___     46 AT------CGGTAAGGAAGAAATTCAGGAGGTTACAGAAACGCTTGAATC     89
                     ||      |.|||      |||  |||||..||..|.||..|.||||| |
BL03075___sps     30 ATTTCAAACAGTA------AAA--CAGGATATTTTAAAAGAGTTTGAA-C     70

BSNT_05798___     90 --GGGATGG--------CTTTCTAAA---GGCCCGAAGGTTCAGCAGTTT    126
                       |.|.|||        |..|.||.|   ||.||.||||||.|..|.||.
BL03075___sps     71 ATGTGCTGGACAGCGGCCAATATATATTGGGGCCAAAGGTTGAAGAATTA    120

BSNT_05798___    127 GA-AAAAGAGTTTGCCGCGTTTG------TCGGGGCGAAGCACGCCGTGG    169
                     || ||||||.|    .||   ||      |.||.|..||..|.||.||.|
BL03075___sps    121 GAGAAAAGAAT----AGC---TGAAAAGCTTGGTGTAAAAGAAGCGGTCG    163

BSNT_05798___    170 CGGT------------GAATTCAT--GTACCGCAGCTTTA--TTTTTGGC    203
                     ||||            |.||.|||  ||.|.|..||||.|  .|||.|||
BL03075___sps    164 CGGTCGCCAACGGAACGGATGCATTGGTGCTGACGCTTGAAGCTTTCGGC    213

BSNT_05798___    204 TTTGAAAGCAAAAGGGATCGGGCCCGGGGACGAGGTCATTACCTCTCCGC    253
                     .|.|   |||||             |||||.||.||.|||||..|.|||.
BL03075___sps    214 ATCG---GCAAA-------------GGGGATGAAGTGATTACGACCCCGT    247

BSNT_05798___    254 TTACGTTCAGCTCGACCGCC-AATACGATTATTCATACGGGAGCGACG--    300
                     |.||.||...|.|.|||||| ||..||     ||..|.|||.|.|  |  
BL03075___sps    248 TCACTTTTTTCGCCACCGCCGAAGCCG-----TCTCAAGGGTGGG--GGC    290

BSNT_05798___    301 ----CCTGTGTTTGCGGATATTGA--CCAAAACACGCT-CAATATTGACC    343
                         |||||||||||.|||.|.||  |..|||||   | ||||.||||.|
BL03075___sps    291 TGAACCTGTGTTTGCTGATGTCGATCCTGAAACA---TACAATCTTGATC    337

BSNT_05798___    344 CGGTAAAGCTTGAGGCGGCCGTCACACC-GCGAACGAAAGCAGTTGTGCC    392
                     ||..|||..|.||.|......||||.|| || .||.|||||..|..|.||
BL03075___sps    338 CGAAAAAAATAGAAGAAAAGATCACCCCTGC-TACTAAAGCGATCATTCC    386

BSNT_05798___    393 CGTCCA---CTTTGGCGGGCAGTCCTGC-GATATGGATGCAATATTGGCT    438
                     ||||||   |||   |||.||| ||.|| ||||||||.|..||..|||..
BL03075___sps    387 CGTCCATATCTT---CGGACAG-CCGGCTGATATGGACGAGATCATGGAG    432

BSNT_05798___    439 ATTGCCCAAAATCATGGTTTATTCGTGCTGGAGGATG-------------    475
                     .|||||.||||.||.||..|..|.|||.|.|||||||             
BL03075___sps    433 CTTGCCAAAAAACACGGACTGCTTGTGATTGAGGATGCCTGCCAAGCGTT    482

BSNT_05798___    476 CGGCACATGCGGTATATACGACTTATAAGCAAAGA-----ATGATCGGTT    520
                     ||||.|||             |.|||    |||||     .|| ||||..
BL03075___sps    483 CGGCGCAT-------------CGTAT----AAAGAGCGGCCTG-TCGGCA    514

BSNT_05798___    521 CTATCGGAGATGCAACGGC----ATTCAGCTTTTACGCCACCAAAAACCT    566
                     ..|||||.|||||  ||.|    .||||  ||||.|.|.||.||||||.|
BL03075___sps    515 GCATCGGGGATGC--CGCCTGTTTTTCA--TTTTTCCCTACAAAAAACTT    560

BSNT_05798___    567 CGCGACA---GGGGAAGGCGGCATGCTGACGACTGATGATGAGGAGCTTG    613
                     .|..|||   ||.||.||.||.|||.||||||.|                
BL03075___sps    561 GGGAACATTGGGAGACGGGGGAATGGTGACGATT----------------    594

BSNT_05798___    614 CCGATAAGATCCGGGTGCTAAGCCTTCACGGCATGAGTA--AAGCCGCAT    661
                         |.|||.||||.|||  ||||    |||||  |.||  ||..|.|| 
BL03075___sps    595 ----TCAGACCCGGATGC--AGCC----CGGCA--ATTAAGAACACTCA-    631

BSNT_05798___    662 GGAACCGTTATTCTTCAAATGGCAGCTGG-------TACT---ATG---A    698
                      |||||           .|||||| ||.|       ||||   |||   |
BL03075___sps    632 -GAACC-----------CATGGCA-CTAGCAAAAAATACTTCCATGACAA    668

BSNT_05798___    699 AGTCG-----AATCGCCCGGCTATAAGATGAATATGTTTGATTTGCAGGC    743
                     |.|||     || |..|||.||      |||       |||.||.||.||
BL03075___sps    669 AATCGGTTTCAA-CAGCCGTCT------TGA-------TGAATTACACGC    704

BSNT_05798___    744 GGC------CCTCGGACTTCATCAGCTAAA----ACGGCTGGATGATATG    783
                     .||      .|||...||||.|.||  |||    |||||||||    |||
BL03075___sps    705 CGCAGCTTTACTCATTCTTCTTGAG--AAAATCGACGGCTGGA----ATG    748

BSNT_05798___    784 CAGAAACGGAGAGAAGAGATTGCCGGCCGCTATCAAACCGCTTTTCAGCA    833
                     .|.|||  || ||||||| |.|||.|||||||             ||| |
BL03075___sps    749 AACAAA--GA-AGAAGAG-TGGCCAGCCGCTA-------------CAG-A    780

BSNT_05798___    834 GATTCCGGGACTGATCACGCCGTTTGTCCATGA-----------TGACGG    872
                     ||    .||..|||..|||.||         ||           ||.|||
BL03075___sps    781 GA----AGGTTTGAAAACGGCG---------GAGCACCTCACACTGCCGG    817

BSNT_05798___    873 CAG------------GCACGC----CTGGCATCTATA-TGT-TCTGCAAG    904
                     |||            ||||.|    ||..|||||.|| ||| ||.||   
BL03075___sps    818 CAGAGAAAGAGGACCGCACACATATCTATCATCTCTATTGTATCGGC---    864

BSNT_05798___    905 TTGATGAAAAAAAGGCCGGGGTTAC---------GCGCAGCGAAATGATT    945
                          |..|||||  |||.|..|||         .|||.|   ||.||..
BL03075___sps    865 -----GCGAAAAA--CCGCGACTACATCATACAATCGCTG---AAAGAGC    904

BSNT_05798___    946 ACGGCTTTAA---AGG-----ATAAATACAATATCGGCACTAGCGTTCAT    987
                     |.|.|.||.|   |||     ||        ||||....|| ||.|||||
BL03075___sps    905 AGGACATTCATTCAGGTGTGTAT--------TATCCTTGCT-GCCTTCAT    945

BSNT_05798___    988 ----------TTTATTC-------CAGTACACATTCATCCGTATTATCAA   1020
                               |.|||||       |||||||.|               ||
BL03075___sps    946 CTGCAATCGGTCTATTCTTCACTGCAGTACAAA---------------AA    980

BSNT_05798___   1021 AAGCAATTTGGATATAAGGAAGCGGA---CTT-TCCGAATGCCATGAATT   1066
                     |.||.||||...|||     |||.||   ||| |||||            
BL03075___sps    981 AGGCGATTTTCCTAT-----AGCCGAGTCCTTGTCCGA------------   1013

BSNT_05798___   1067 ACTATAAACGAACCCTTTCTC----TCCCGCTCTATCCATCAATGTCT-G   1111
                               |||||||| ||    |.|||    ||..|||..|.||| |
BL03075___sps   1014 ----------AACCCTTT-TCGCCATTCCG----ATGGATCCTTTTCTAG   1048

BSNT_05798___   1112 ACGACGATGTAGATGATGTCATTGAAGCTGTGCGG--GATATCGTAAA--   1157
                     .||.|||.|.|.|.|||...|||....|||.||.|  ||.|    |||  
BL03075___sps   1049 CCGCCGAGGAACAAGATCAGATTATTTCTGCGCTGCTGAAA----AAAGG   1094

BSNT_05798___   1158 ---AGGGG----CTGATTAA   1170
                        |||||    .|||    
BL03075___sps   1095 AGGAGGGGAAAAGTGA----   1110


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