Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06191 and BL03098

See Amino acid alignment / Visit BSNT_06191 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:09
# Commandline: needle
#    -asequence dna-align/BSNT_06191.1.5803.seq
#    -bsequence dna-align/BL03098___sdpR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06191-BL03098___sdpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06191-BL03098___sdpR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06191
# 2: BL03098___sdpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:     168/295 (56.9%)
# Similarity:   168/295 (56.9%)
# Gaps:          68/295 (23.1%)
# Score: 508.5
# 
#
#=======================================

BSNT_06191         1 ------------------------------------------------TT      2
                                                                     ||
BL03098___sdp      1 ATGAATCAAACCTTTAAAGCTCTAGCTGATCCGACGAGAAGAAAGATTTT     50

BSNT_06191         3 GGATTTGTTAAAACAACAAGATTTAACAGCCGGGCAAATTGCTGACCAAT     52
                     |.|..||.|.||..|.|..|||.|.||.|||||..|||||.|.|||||.|
BL03098___sdp     51 GAACCTGCTGAAGGACCGGGATATGACCGCCGGTGAAATTTCCGACCAGT    100

BSNT_06191        53 TTGATATGTCAAAACCTAGTATTTCTCATCACTTAAATATTTTAAAGAAC    102
                     ||.|.|||||.|||||.|||||||||||.||.|||||.|||||||  |||
BL03098___sdp    101 TTCAAATGTCTAAACCAAGTATTTCTCAGCATTTAAAAATTTTAA--AAC    148

BSNT_06191       103 A--CTGATTTAGTACGAGACCAAAAAAAGGGACAATTTATTATTTATTCT    150
                     |  ||||.|||.|.|..||..|||||||.||.||||..||.||.||.||.
BL03098___sdp    149 AGGCTGAATTAATTCAGGATGAAAAAAAAGGCCAATACATCATCTACTCG    198

BSNT_06191       151 TTAAATACGAC--TGTACTTCAAGATCTTATTGGCTGGTTTTT---TTCC    195
                     .||||.||.||  |||  |||||||..|.||.||||||..|||   ||  
BL03098___sdp    199 CTAAACACTACAATGT--TTCAAGAAATCATCGGCTGGGCTTTCAGTT--    244

BSNT_06191       196 CTTACAGATACAGACCATGACAAGAAGGAAGG---TGGAGAATGA    237
                      ||||.|| |||..||  |.|||..|..||||   ||.|.|||||
BL03098___sdp    245 -TTACTGA-ACAAGCC--GGCAAAGATAAAGGGGATGCAAAATGA    285


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