Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01324 and BL03113

See Amino acid alignment / Visit BSNT_01324 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_01324___yfkF.1.5803.seq
#    -bsequence dna-align/BL03113___yfkF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01324___yfkF-BL03113___yfkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01324___yfkF-BL03113___yfkF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01324___yfkF
# 2: BL03113___yfkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1256
# Identity:     840/1256 (66.9%)
# Similarity:   840/1256 (66.9%)
# Gaps:         157/1256 (12.5%)
# Score: 2715.5
# 
#
#=======================================

BSNT_01324___      1 ATGTCACGATTTCATTTCTTTATCCTTGTCTTGCTCGTATCCATTTCCGG     50
                     |||.|..|||||||.||.||.||.||.||.|||.|.||....||.||.||
BL03113___yfk      1 ATGACTAGATTTCACTTTTTCATTCTCGTTTTGATTGTCAGTATATCAGG     50

BSNT_01324___     51 GTTTTCACAAGGCATGCTGCTGCCTGTCATTTCAATCATTTTTGAAACA-     99
                     .|||||.|||||.|||||.||.||.|||||.||..|.|||||.| |||| 
BL03113___yfk     51 TTTTTCGCAAGGGATGCTCCTTCCGGTCATCTCTGTTATTTTCG-AACAG     99

BSNT_01324___    100 -AATGGAGAATCCGCTGCTATCAACGGCCTGCACGCGACCGGGCTGTATA    148
                      || ||..|.||.|||||..|.|||||.||.||.|||||.||.||.||.|
BL03113___yfk    100 GAA-GGCCATTCGGCTGCACTGAACGGGCTTCATGCGACAGGCCTCTACA    148

BSNT_01324___    149 TCGGTGTGCTTTTGGCTTCGCCGTTTATGGAAGCGCCGCTCAGAAAGCTC    198
                     ||||.||.||..|.||||||||.||.||||||||.|||||..|.|.||||
BL03113___yfk    149 TCGGCGTCCTGATCGCTTCGCCTTTCATGGAAGCACCGCTTCGCAGGCTC    198

BSNT_01324___    199 GGGTTCAAGCCGCTGATCGTCATGGGCGGAAGCATTGTCATTTT------    242
                     ||.||.||.||||||||.|||||.|||||      .||.||..|      
BL03113___yfk    199 GGTTTTAAACCGCTGATTGTCATCGGCGG------GGTGATGGTGTGCGC    242

BSNT_01324___    243 AAGCTTATTCGGATTTATTTGGCTTCAGTCAGTTT-GGGTCTGGTTCCTG    291
                     .||.||.||||..|||.|||...||||||| |||| ..||.||||||.|.
BL03113___yfk    243 GAGTTTGTTCGCCTTTGTTTTTATTCAGTC-GTTTATCGTTTGGTTCTTT    291

BSNT_01324___    292 CTTCGCCTGTTCATTGGAATCGGCGACCACATGCTTCACTTTTCTACGCA    341
                     .|.||.||.||.||.||||||||.||.||.|||||.||||||||.|||||
BL03113___yfk    292 TTGCGGCTCTTGATCGGAATCGGGGATCATATGCTGCACTTTTCAACGCA    341

BSNT_01324___    342 AACGTGGGTGACCTCCATGTCATCAAAACAAAATCGCGGAAGAAACCTGT    391
                     |||.|||||||||.|..|.||.||..||.||||.|||||..|.||..|.|
BL03113___yfk    342 AACTTGGGTGACCACATTATCGTCTGAAAAAAAACGCGGCCGCAATATCT    391

BSNT_01324___    392 CTATTTACGGGCTTTCCTTTGGCCTTGGCTTTGCCGCAGGCCCGTTCATG    441
                     ||.|.|||||.|||||.|||||..|.||.|||||.||.||.||.||..|.
BL03113___yfk    392 CTTTGTACGGCCTTTCGTTTGGTTTGGGATTTGCAGCCGGGCCTTTTTTA    441

BSNT_01324___    442 GTGCCGCTTGTCAAGCTGAGTCCGTCGC--------TTCCTTTTATCGTG    483
                     ..||||||||||||        |.||||        |.||.||||||||.
BL03113___yfk    442 ACGCCGCTTGTCAA--------CATCGCCCCATCATTGCCGTTTATCGTC    483

BSNT_01324___    484 TCCGGCTGC-ATCAGTCTGTTTGCGTGGCTTTTTGTTTTCTTTCTACAAA    532
                     ||.|| ||| .||||.|||.|.||.|||||.|||.||||.|..||.||||
BL03113___yfk    484 TCAGG-TGCGTTCAGCCTGCTGGCATGGCTGTTTATTTTTTGCCTGCAAA    532

BSNT_01324___    533 ATGCATACCC---GGAAACCAGTCCTCATGAAA-CCAAATCAGACAATAG    578
                     |.|..|.|||   |.|||.|.|  ||| ||||| ||..|.| ||.||.||
BL03113___yfk    533 ACGATTTCCCTGAGAAAAGCGG--CTC-TGAAAGCCGCAGC-GATAACAG    578

BSNT_01324___    579 TTTCAGGCGATTTTATCAGGCCATGCTGTTTGGGTGGGTTGCCTTTATGC    628
                     .||.|.|||.||...|||.|||.|.|||.||||||||||.||.|||.|||
BL03113___yfk    579 CTTGAAGCGTTTCGCTCAAGCCTTCCTGCTTGGGTGGGTCGCGTTTTTGC    628

BSNT_01324___    629 CTACATTTGGCTATGGCTTTTTGGAAACGGCGCTGAACGGAAGCTTTCCG    678
                     |.|||||.|||||.||||||||||||||.||.||||||||.|..|||||.
BL03113___yfk    629 CGACATTCGGCTACGGCTTTTTGGAAACCGCCCTGAACGGCAATTTTCCC    678

BSNT_01324___    679 GTGTACGCGCTCCGTTTGGGGATATCAGTAGACGCAGTAGCGATCATCCT    728
                     ||.||.||||||||.|.|||.||.||.||.||.|..|||.|||||||.||
BL03113___yfk    679 GTCTATGCGCTCCGGTCGGGCATTTCCGTCGAAGGCGTATCGATCATTCT    728

BSNT_01324___    729 TCCCGCATTTGCGATTGGAAGCATTATTTTTCAGTTTCCGCTCGGCATCC    778
                     |||.||.||||||||.||||||||..|.|||||||.||||||||||.|..
BL03113___yfk    729 TCCGGCTTTTGCGATCGGAAGCATCGTCTTTCAGTATCCGCTCGGCGTGT    778

BSNT_01324___    779 TCAGCGATAAATACGGCAGGCGGAATGTGCTGCTGGTGAT-TTTACTGAC    827
                     |.|||||.||.|||||.|||||.|||||.||.||.||.|| ||..|||.|
BL03113___yfk    779 TGAGCGACAAGTACGGAAGGCGAAATGTACTCCTTGTCATATTGGCTGTC    828

BSNT_01324___    828 TGGGGC--------TCTTTGCT------TTTTCATCG---CCGGTGTATT    860
                      |||||        ||||||||      |||||  ||   |||       
BL03113___yfk    829 -GGGGCAGGCTGCTTCTTTGCTGCGGGCTTTTC--CGAATCCG-------    868

BSNT_01324___    861 TCCTTCGCCTTACGTGATCGGCGGC-TGCTTTTTTATTGCGGGAATGGCA    909
                     |.||||..|||         ||||| ||.|||||.||.||.||||||||.
BL03113___yfk    869 TTCTTCTGCTT---------GCGGCATGTTTTTTCATAGCCGGAATGGCT    909

BSNT_01324___    910 GTCGGATCAACCTTTACACTTGGCATCAGCTATATGACAGATCTTCTTC-    958
                     ||.||||||||.|||.||||.||||||||.|.||||.|.||.||.|||| 
BL03113___yfk    910 GTGGGATCAACTTTTTCACTCGGCATCAGTTTTATGGCCGACCTGCTTCC    959

BSNT_01324___    959 ----CGCCTCATCTCCTGCCGGCGGGAAACCTGCTTTGCGGCATTACATT   1004
                         |||||  ||||   |||||.||.|||.||.|.|||||.||||||||
BL03113___yfk    960 AAAACGCCT--TCTC---CCGGCCGGGAACTTGATGTGCGGAATTACATT   1004

BSNT_01324___   1005 CAGTCTCGGCAGCATCCTCGGTCCGGTTGCCGGCGGCTGGTATATGCAGA   1054
                     |||..||||.|||||..|||||||||||||.|||||.|||||||||||||
BL03113___yfk   1005 CAGCTTCGGAAGCATTTTCGGTCCGGTTGCAGGCGGGTGGTATATGCAGA   1054

BSNT_01324___   1055 CATT---TGAAAGCGCAAACTTGTTCTACTTCATTACTCTCACGCTTAGC   1101
                     .|||   |.|.|||   |||.||||.||.||.||||    ||.||   |.
BL03113___yfk   1055 TATTCCATAACAGC---AACCTGTTTTATTTGATTA----CATGC---GT   1094

BSNT_01324___   1102 GCT-GTGTGG--CTGG-CCCTTGTGC---TGGGCAAACCGAAAA------   1138
                     |.| ||||.|  |||| .|...||||   |.||||||.||||.|      
BL03113___yfk   1095 GATGGTGTTGATCTGGATCGGGGTGCTCTTTGGCAAAACGAAGAAAAACG   1144

BSNT_01324___   1139 GCTGGTCAC-------------CGGC-----TGAAACCTATTCTTCATCT   1170
                     || |.||.|             ||||     ||.||              
BL03113___yfk   1145 GC-GCTCTCGAACAATCTGAGGCGGCGCCAATGTAA--------------   1179

BSNT_01324___   1171 TCTTAA   1176
                           
BL03113___yfk   1179 ------   1179


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