Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05356 and BL03117
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_05356___yvkB.1.5803.seq
# -bsequence dna-align/BL03117___yvkB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05356___yvkB-BL03117___yvkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05356___yvkB-BL03117___yvkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05356___yvkB
# 2: BL03117___yvkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity: 322/719 (44.8%)
# Similarity: 322/719 (44.8%)
# Gaps: 292/719 (40.6%)
# Score: 561.5
#
#
#=======================================
BSNT_05356___ 1 TTG--AGACCGACAAACAAGAGAATCCTTGATGCTGC---------CATG 39
||| ||| |||.|||.|..|.|||.|...|||||| .|||
BL03117___yvk 1 TTGCAAGA--GACGAACGAACGGATCATATCTGCTGCTTTAGACTTAATG 48
BSNT_05356___ 40 CA--------GCTGCTCGT------CAAAAAAGGATATCGCGCAACAACT 75
|| |.|.|..|| |||.||||||||||||||..||
BL03117___yvk 49 CAAAAATACGGATTCAAGTCGGTGACAATAAAGGATATCGCGCTTCA--- 95
BSNT_05356___ 76 ACAAAAGAAATTGCAGAAAAAGCAAATGTAAGTGAAGCGACGATTTTCAG 125
|.||| || ||.||.||...||||.|.|.|.|
BL03117___yvk 96 -----------TTCAG-----GC----GTCAGCGAGATGACGGTCTACCG 125
BSNT_05356___ 126 GAACTTTAAAAACAAACAAGGACTAGTTGAGGCTTTGCTTTCTCAGCATT 175
..||||.||||..||.|..|||||..|.||.|| .||..| |||.||.|
BL03117___yvk 126 CCACTTCAAAACTAAGCTTGGACTTTTGGAAGC--GGCCGT-TCAACAAT 172
BSNT_05356___ 176 CTTC----AAACAGAGGCAGCATTTTGGAACAAACAGAAGGGGATTTGTA 221
.||| |.|| ||||.||| ||| .|.|.|||||
BL03117___yvk 173 TTTCTTATATAC-----CAGCCTTT---------CAG-CGCGTATTTG-- 205
BSNT_05356___ 222 CAAAGACCTGCTTCATATC----GGAACCTGTCTCTTGGAGGAGCTCGAA 267
||.|| .||||| ||||||| ||||
BL03117___yvk 206 --AAAAC------GATATCACTTGGAACCT----------GGAG------ 231
BSNT_05356___ 268 CATAGAAAAGA--TATCATTAAAATCAGCTTTCGTGAACCGGCCATGTTT 315
||||| ||.||||.| ||...|||.||....||.||
BL03117___yvk 232 ------AAAGACTTAACATTGA--------TTGCAGAATCGTATTTGCTT 267
BSNT_05356___ 316 CAGGATGTCATTAACCACGTCACTGAA---TATCCCCAATC--------- 353
|| .|||..|..||.||.|.|.||..| ||||.|...||
BL03117___yvk 268 CA-TATGGAAAAAAACAAGCCGCTCTACCTTATCGCTGTTCAAGACGGCG 316
BSNT_05356___ 354 ----TATGAAACAGCTATT-GGTTGATTATCTC----AAAACA-ATGGGT 393
.||||...|.||.|| ||| |||| |||.|| ||||
BL03117___yvk 317 GAAGGATGACTGATCTTTTCGGT------TCTCTGTTAAAGCATATGG-- 358
BSNT_05356___ 394 GAGAAAGG--------GGTTATT---CAGA----------------CAGG 416
||| .|||||| |||| ||||
BL03117___yvk 359 -----AGGAGCTCCTTTGTTATTTAACAGACTACTTTCGGACGATGCAGG 403
BSNT_05356___ 417 A---------AATG---AAGCGGAGCATGCCGACGTGTTCA--------- 445
| .||| ||| |||| ||||.|| ||||
BL03117___yvk 404 ACAAAAACCTGATGAAAAAG-GGAG-ATGCAGA----TTCACAGGCCTTC 447
BSNT_05356___ 446 -------TGTCGATTATCTT----CGGTTATTTCATTCACCGTCT---CC 481
|||| ||||| |||.||.||| .||||| .|
BL03117___yvk 448 GCTTTTCTGTC----ATCTTTATACGGATACTTC-----TCGTCTGGCGC 488
BSNT_05356___ 482 A----CTTAGGAGACCGGGTCATATCAATGCCCCAGGAAAAAAT-GCTGG 526
| || ||.|.||| .|.|| |||||.| |||..
BL03117___yvk 489 ATTGGCT--GGCGGCCG----TTTTC-----------AAAAAGTCGCTAA 521
BSNT_05356___ 527 AGCACAGCACAGCTCTATTTGTCAAAGGAAT----------TTCTGC--- 563
|| |||..|.|||| |||...|| ||||||
BL03117___yvk 522 AG------ACACTTATATT----AAACAGATAACCGCCGCCTTCTGCGGC 561
BSNT_05356___ 564 ------------TGATTAA 570
|||
BL03117___yvk 562 GGCTTGCATGTATGA---- 576
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