Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03918 and BL03120

See Amino acid alignment / Visit BSNT_03918 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03918___sacC.1.5803.seq
#    -bsequence dna-align/BL03120___sacC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03918___sacC-BL03120___sacC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03918___sacC-BL03120___sacC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03918___sacC
# 2: BL03120___sacC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2110
# Identity:    1550/2110 (73.5%)
# Similarity:  1550/2110 (73.5%)
# Gaps:         128/2110 ( 6.1%)
# Score: 5670.0
# 
#
#=======================================

BSNT_03918___      1 ATGAAGAGAGGAGCGAAGGAACAAATGAAAAAGAGACTTATTCAAGTCAT     50
                                             ||||||||||||.|.|||||..|...
BL03120___sac      1 ------------------------ATGAAAAAGAGAATGATTCAGATGGG     26

BSNT_03918___     51 GATCAT--GTTCACCCTGCTGTTGACTATG------------GCATTTTC     86
                     ||||||  |              |.|||||            ||.|||||
BL03120___sac     27 GATCATAGG--------------GGCTATGATGTTCCCGGAAGCCTTTTC     62

BSNT_03918___     87 GGCAGATGCAGCCGATTCAAGCTACTATGATGAGGATTACCGTCCTCAA-    135
                     .||||.|||.|||||..|...|||||||.|.||||||.|.||.|| ||| 
BL03120___sac     63 CGCAGCTGCTGCCGACCCGGACTACTATAACGAGGATCATCGGCC-CAAG    111

BSNT_03918___    136 TACCACTTCACACCAGAGGCAAACTGGATGAATGACCCAAACGGAATGGT    185
                     ||.||.|||||.||.||.||||||||||||||||||||.|||||.|||||
BL03120___sac    112 TATCATTTCACGCCGGAAGCAAACTGGATGAATGACCCGAACGGGATGGT    161

BSNT_03918___    186 ATATTATGCCGGGGAATATCACTTGTTCTATCAATACCATCCATACGGGC    235
                     .|||||.||.|||||||||||..||||.||||||||.|||||||| .|||
BL03120___sac    162 GTATTACGCGGGGGAATATCATCTGTTTTATCAATATCATCCATA-TGGC    210

BSNT_03918___    236 TT-CAGTGGGGGCCCATGCATTGGGGGCATGCCGTCAGCAAAGATTTGGT    284
                     || |..||||||||.||||||||||||||.||.||.|||||||||||.||
BL03120___sac    211 TTGCGCTGGGGGCCAATGCATTGGGGGCACGCGGTAAGCAAAGATTTAGT    260

BSNT_03918___    285 TACATGGGAACACCTTCCTGTTGCGCTGTATCCGGATGAAAAAGGCACGA    334
                     .|..|||||.||..|.||.||.||.||||||||||||||||||||.||||
BL03120___sac    261 CAAGTGGGAGCATTTGCCGGTCGCACTGTATCCGGATGAAAAAGGAACGA    310

BSNT_03918___    335 TCTTTTCTGGAAGCGCAGTTGTAGATAAAAATAACACAAGCGGTTTTCAA    384
                     |.|||||.||.|||||.||.|..|||....||||.||.|..||.||||||
BL03120___sac    311 TTTTTTCGGGCAGCGCTGTCGCCGATCGGCATAATACTACAGGGTTTCAA    360

BSNT_03918___    385 ACAGGCAAAGAGAAGCCGCTTGTGGCCATTTATACACAGGATCAGGA-AG    433
                     |||||.|..|||||||||||.||.|||||||||||.||||| |.||| .|
BL03120___sac    361 ACAGGGACGGAGAAGCCGCTCGTTGCCATTTATACGCAGGA-CCGGAGCG    409

BSNT_03918___    434 GCCATCAAGTGCAAAGTATTGCCTATAGCAACGACAAAGGAAGAACATGG    483
                     |..|.|||||||||||.||.|||||.|||||.||||||||.||.||||||
BL03120___sac    410 GGGAACAAGTGCAAAGCATCGCCTACAGCAATGACAAAGGCAGGACATGG    459

BSNT_03918___    484 ACGAAATACGCTGGCAACCCTGTCATTCCAAACCCGGGTAAAAAAGATTT    533
                     |||||.|||.|.||||||||||||||||||||.|||||.||||.||||||
BL03120___sac    460 ACGAAGTACTCAGGCAACCCTGTCATTCCAAATCCGGGAAAAAGAGATTT    509

BSNT_03918___    534 TCGCGATCCAAAAGTCTTTTGGTATGAAAAAGA-AAAAAAGTGGGTGATG    582
                     .||||||||.||||||.|||||.||| ||.||| ||||||||||||||||
BL03120___sac    510 CCGCGATCCGAAAGTCATTTGGCATG-AACAGACAAAAAAGTGGGTGATG    558

BSNT_03918___    583 GTGCTTGCGGCCGGTGACCGTATCCTCATTTATACATCAAAAAATCTGAA    632
                     .|||||||||..||.||.||.||.||.||.||||||||.....|..||||
BL03120___sac    559 TTGCTTGCGGGGGGCGATCGAATTCTGATCTATACATCGCCTGACTTGAA    608

BSNT_03918___    633 GCAGTGGACGTATGCAAGTGAATTTGGTC--AGGATCAAGGAAGCCACGG    680
                     ||.||||||.|||||.||.|||||.|| |  |||| .|.||.|||||.||
BL03120___sac    609 GCGGTGGACATATGCGAGCGAATTCGG-CGAAGGA-GAGGGCAGCCATGG    656

BSNT_03918___    681 AGGAGTATGGGAATGCCCGGATTTATTTGAGCTTCCGGTAGACGGCAATC    730
                     |||.||.||||||||.||||||.|.|||||||||||.|||||.||||..|
BL03120___sac    657 AGGCGTGTGGGAATGTCCGGATCTGTTTGAGCTTCCTGTAGAGGGCAGGC    706

BSNT_03918___    731 CGAATCAAAAGAAATGGGTCATGCAGGTCAGTGTCGGAAACGGAGCGGTC    780
                     |||||.|||.|||||||||.|||||.||||||||.|||.||||.||.|||
BL03120___sac    707 CGAATGAAACGAAATGGGTGATGCAAGTCAGTGTTGGAGACGGTGCTGTC    756

BSNT_03918___    781 TCGGGAGGATCAGGCATGCAATATTTTGTAGGGGACTTTGATGGAACTCA    830
                     ||.|||||||||||||||||||||||.||.||....|||||.|||||...
BL03120___sac    757 TCAGGAGGATCAGGCATGCAATATTTCGTCGGCAGTTTTGACGGAACAAC    806

BSNT_03918___    831 TTTTAAAAATGAAAACCCGTCAGACAAA----GTTCTCTGGACGGATTAC    876
                     .|||||||||||||||||    |.|.||    ||.||.|||||.||||||
BL03120___sac    807 CTTTAAAAATGAAAACCC----GCCGAATCGCGTACTATGGACAGATTAC    852

BSNT_03918___    877 GGCAGAGACTTTTATGCGGCTGTATCCTGGTCCGATATTCCATCAA--CA    924
                     ||||.||||||.||.||.|||||...||||||.|||||.||  .||  ||
BL03120___sac    853 GGCAAAGACTTCTACGCAGCTGTCAGCTGGTCTGATATCCC--GAAGTCA    900

BSNT_03918___    925 GACAGCCGCCGGCTATGGTTAGGGTGGATGAGCAATTGGCAATATGCGAA    974
                     |||.|.||..||||.|||||||||||||||||||||||||||||.||.||
BL03120___sac    901 GACGGACGAAGGCTTTGGTTAGGGTGGATGAGCAATTGGCAATACGCAAA    950

BSNT_03918___    975 TGATGTTCCGACATCCCCATGGAGAAGTGCAACGTCCATTCCAAGAGAGT   1024
                     .||||||||.||.|||||.||||||||.||||.|||.||.||.|||||..
BL03120___sac    951 CGATGTTCCCACTTCCCCGTGGAGAAGCGCAATGTCGATCCCGAGAGAAG   1000

BSNT_03918___   1025 TAAAATTGAAAGCGTTTACCGAAGGGGTTAGAGTGGTCCAAACACCAGTG   1074
                     |||||||||||||||||.||||||||.|||||.||.|.|||.|.||.||.
BL03120___sac   1001 TAAAATTGAAAGCGTTTTCCGAAGGGCTTAGAATGATTCAAGCTCCGGTA   1050

BSNT_03918___   1075 AAAGAGCTGGAAACCATTCGCGGGA-CCTCTAAGAAGTGGAAGAATCTGA   1123
                     ...||||||.|..|.||.|| |||| |.||..|.|.||||||.||...||
BL03120___sac   1051 GCGGAGCTGCAGTCGATACG-GGGAGCATCGCAAACGTGGAAAAACAAGA   1099

BSNT_03918___   1124 CCATATCGCCT-GCAAGTCATAATGTGTTAGCAGGGCAATCTGGAGATGC   1172
                     .|||.|||||| |.||...| |||.||.|...|||||..||.||.|||||
BL03120___sac   1100 TCATTTCGCCTCGAAACGGA-AATTTGCTGAAAGGGCTGTCAGGCGATGC   1148

BSNT_03918___   1173 CTATGAAATAAATGCAGAATTTAAAGTAAGCCCTGGTTCAGCTGCTGAAT   1222
                     .||||||||.|||||.||||||.||||||...|.||..|.||.||.||||
BL03120___sac   1149 TTATGAAATCAATGCGGAATTTCAAGTAAATACCGGAGCTGCGGCCGAAT   1198

BSNT_03918___   1223 TTGGTTTTAAGGTCCGAACAGGTGAAAATCAATTTACGAAGGTCGGCTAT   1272
                     |.||.|||||.|||||||||||.|||||..|.|.||||||..|||||||.
BL03120___sac   1199 TCGGCTTTAAAGTCCGAACAGGGGAAAACGAGTATACGAAAATCGGCTAC   1248

BSNT_03918___   1273 GACCGAAGGAACGCCAAATTGTTCGTTGACCGGAGCGAGTCGGGCAACAA   1322
                     ..|..||..|.|||...|.|||||||.|||||||||.|.||.||.|||..
BL03120___sac   1249 AGCAAAAACAGCGCTTCACTGTTCGTCGACCGGAGCCAATCAGGAAACGT   1298

BSNT_03918___   1323 CACCTTTAATCCGGCCTTTAACACCGGAAAAGAAACAGCCCCATTGAAGC   1372
                     |.|||||||||||..|||||||||.|||||..|..|.|||||..||.|.|
BL03120___sac   1299 CTCCTTTAATCCGAACTTTAACACTGGAAAGCATGCGGCCCCGCTGGAAC   1348

BSNT_03918___   1373 CGGTAAATGGGAAGGTTAAGATGCGCATTTTTGTTGACCGCTCTTCGGTT   1422
                     ||||...|||||||||.|||||||||||||.|||.|||||||||||.||.
BL03120___sac   1349 CGGTCGCTGGGAAGGTGAAGATGCGCATTTATGTCGACCGCTCTTCAGTC   1398

BSNT_03918___   1423 GAAGTATTTGGGAATGACGGAAAGCAGGTCATAACGGATATTATTCTCCC   1472
                     ||||||||.||.||.|||||.|.||||||.||.||.||.||||||.|.||
BL03120___sac   1399 GAAGTATTCGGCAACGACGGGAGGCAGGTGATCACCGACATTATTTTGCC   1448

BSNT_03918___   1473 AGACCGATCAAGCAAAGGGCTTGAATTATATGCTGCAAATGGCGGTGTAA   1522
                     .||||.|||.|||||||||||.|||.||||.||..||||.||...|||.|
BL03120___sac   1449 GGACCAATCCAGCAAAGGGCTAGAAGTATACGCATCAAACGGGTTTGTCA   1498

BSNT_03918___   1523 AGGTAAAATCTTTAACGATACACCCTTTGAAAAAGGTATGGGGAACGTCA   1572
                     ||.|.||.||..|.|||.|.||.|||.|||||||.|||||||||.||||.
BL03120___sac   1499 AGCTGAATTCCATGACGGTTCATCCTCTGAAAAAAGTATGGGGAGCGTCG   1548

BSNT_03918___   1573 CCTTTTATGTCCAATTTGACCGGCTGGACGACTGTAAATGGCACGTGGGC   1622
                     ||.|||...||.||||||||||||||||||||.|||||.||....|||||
BL03120___sac   1549 CCCTTTCAATCAAATTTGACCGGCTGGACGACCGTAAACGGTGTATGGGC   1598

BSNT_03918___   1623 CGACACAATTGAGGGGAAACAAGGGAGGTCGGACGGAGATTCCTTTATCT   1672
                     |||.||.|||||.||.|||||||||.|.||.||.||||||||.||.||.|
BL03120___sac   1599 CGATACGATTGATGGAAAACAAGGGCGCTCTGAAGGAGATTCGTTCATTT   1648

BSNT_03918___   1673 TGTCTTCAGCATCCGGGTCAGACTTCACTTATGAATCTGATATCACCATT   1722
                     |.|||||||||...|...||||.|||||.||||||.|.|||.||.|.||.
BL03120___sac   1649 TATCTTCAGCAAAAGCAACAGATTTCACATATGAAGCAGATGTCGCGATA   1698

BSNT_03918___   1723 AAGGATGGAAACGGAAGAGGGGCAGGAGCACTAATGTTTCGCTCTGACAA   1772
                     |||||||||||.||||||||||||||.||.||..|||||||..|.||..|
BL03120___sac   1699 AAGGATGGAAATGGAAGAGGGGCAGGGGCTCTCGTGTTTCGGGCCGATCA   1748

BSNT_03918___   1773 AGATGCCAAAAACGGTTACCTTGCCAATGTGGATGCGAAGCATGACCTAG   1822
                     .||||..||||||||.||||||||||||||||||||.|||||||||.|.|
BL03120___sac   1749 GGATGTTAAAAACGGATACCTTGCCAATGTGGATGCCAAGCATGACGTGG   1798

BSNT_03918___   1823 TGAAATTCTTTAAATTTGAGAACGGTGCTGCTTCTGTCATTGCTGAATAC   1872
                     ||||.||.||.||||||||..||||..|.||.|||||.|||||.|||.||
BL03120___sac   1799 TGAAGTTTTTCAAATTTGAAGACGGCTCGGCCTCTGTTATTGCCGAACAC   1848

BSNT_03918___   1873 AAAACACCGATAGACGTTAATAAA--------AAGTATCATCTGAAAACA   1914
                     ...||||||||||        |||        ||.|||||.||||||||.
BL03120___sac   1849 CGCACACCGATAG--------AAACCGGCCGGAAATATCACCTGAAAACG   1890

BSNT_03918___   1915 GAGG-CCGAGG-GCGATCGCTTTAAAATCTATTTA----GATGATCATCT   1958
                     |.|| |||.|| ||.|  .||||    |.||||||    ||||||||..|
BL03120___sac   1891 GTGGCCCGCGGTGCAA--ACTTT----TATATTTACCTTGATGATCAATT   1934

BSNT_03918___   1959 TGTGATTGATGCACATGATTCCGCATTTTCAGAAG--GCCAATTTGGCTT   2006
                     .|||||....||.|..|||||..|.|||.|.||.|  |||  ||.||.||
BL03120___sac   1935 GGTGATAAGCGCCCGGGATTCAACGTTTGCCGATGGAGCC--TTCGGTTT   1982

BSNT_03918___   2007 GAATGTGTGGGACGCGACTGCTGTCTTTCAGAATGT--------AACGAA   2048
                     |||||..|||||.|||||.||.|||||.||..||||        |||||.
BL03120___sac   1983 GAATGCATGGGATGCGACCGCAGTCTTCCAACATGTTTATGCCAAACGAT   2032

BSNT_03918___   2049 GGAGTCTTAA   2058
                     |.        
BL03120___sac   2033 GA--------   2034


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