Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02776 and BL03128

See Amino acid alignment / Visit BSNT_02776 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02776.1.5803.seq
#    -bsequence dna-align/BL03128.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02776-BL03128.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02776-BL03128.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02776
# 2: BL03128
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 885
# Identity:     574/885 (64.9%)
# Similarity:   574/885 (64.9%)
# Gaps:         111/885 (12.5%)
# Score: 1672.5
# 
#
#=======================================

BSNT_02776         1 GTGAAGAAAGTGCCATATTATATCTGCAACACATGCGGTGTGCAACATGC     50
                     .||||.||    |||||||     ||||..||.|||||.||.|||.||  
BL03128            1 TTGAAAAA----CCATATT-----TGCACGACGTGCGGCGTTCAATAT--     39

BSNT_02776        51 ACAGACTG------TAGATCC-GCCCAACTCGTGTCTGATTTGCGAGGAT     93
                      .|..|||      .|||.|| ||..||    ||..|.||||||.|.||.
BL03128           40 -AACGCTGCTTCGAAAGAGCCGGCAGAA----TGCATTATTTGCAATGAA     84

BSNT_02776        94 GAAAGACAGTAT----ATTCATCCCGATGGACAAAGTTGGACAACCCTTG    139
                     ||||||||||||    .||.|||    .||.||||..||||||||.||.|
BL03128           85 GAAAGACAGTATGTCAGTTTATC----AGGGCAAACCTGGACAACACTGG    130

BSNT_02776       140 AAGACATTCGTGAGAAAGGAAACC-------TTCAAAAC---ATCA----    175
                     ||||.||       .|||.|||.|       ||||||||   ||||    
BL03128          131 AAGAAAT-------GAAGCAAAGCGGGAGGTTTCAAAACGAGATCACCTT    173

BSNT_02776       176 TCAAAAAGGAAGAAGAGCATCTTTACAGCATCAAAACTGAACCAGAGTTT    225
                     |       |.|||.||||..||.|||||..|.|..||...|||.||.||.
BL03128          174 T-------GTAGAGGAGCGCCTATACAGTTTGACGACAACACCCGAATTC    216

BSNT_02776       226 GCGATCGGACAAACAGCCCATCTTATCCAGCATAATGGCTTCAATGTGCT    275
                     |..|||||.|||.|.||..|.||.||.|||.|....|||||.||..||||
BL03128          217 GGCATCGGTCAATCGGCGTACCTGATTCAGGAGCCCGGCTTTAACTTGCT    266

BSNT_02776       276 GTGGGATTGTATGACATATCTTGACCAAAAGACAATTGACCAAATC-AAC    324
                     ||||||||||||.|||||.||.||.||....||.|.|||..|.||| |.|
BL03128          267 GTGGGATTGTATTACATACCTGGATCAGCGTACGACTGAGAACATCGAGC    316

BSNT_02776       325 GGATTAGGCGGTATTCAAGCCATCGCCTTGTCTCATCCGCATTATTACTC    374
                     .|| |.|||||.||.||.||.||.||.||.||.||||||||||||||.||
BL03128          317 AGA-TGGGCGGAATCCAGGCGATTGCTTTATCACATCCGCATTATTATTC    365

BSNT_02776       375 TACTCAGGTTGAGTGGGCTGAAGCGTTTCAGGCGCCGATCTATATCCATG    424
                     |.|.||||..||.|||||||||..||||.|.||.|||||||||||.||||
BL03128          366 TGCACAGGCGGAATGGGCTGAAATGTTTGATGCTCCGATCTATATTCATG    415

BSNT_02776       425 AGGATGATAAAGAATGGGTGACA-AGGCCAAGCAATCACATTCACTTCTG    473
                     |.|||||.|||.|||||||| || .||||.||||..|..|||...||.||
BL03128          416 AAGATGACAAACAATGGGTG-CAGCGGCCGAGCAGCCGGATTGTTTTTTG    464

BSNT_02776       474 GTCAGGGGAAACGCTCAACG---TGAAGCCGGGACTGGACCTT-TACCGA    519
                     |||.||.|||||.||||| |   |.||||.||   |.|||||| .||.|.
BL03128          465 GTCCGGCGAAACTCTCAA-GCTATCAAGCGGG---TTGACCTTGCACAGG    510

BSNT_02776       520 CTGGGCGGACATTTTAAAGGCGGTGCTGTTTTGCATTGGAGCAA--GGGC    567
                     ||.|||||.|||||||||||.||.||.||.|..|||||| ||||  ||| 
BL03128          511 CTTGGCGGCCATTTTAAAGGGGGAGCGGTCTGCCATTGG-GCAAACGGG-    558

BSNT_02776       568 AATGAAGGGAAAGG-------CTGTCTATTGACCGGAGATATCATTACGG    610
                     ||.|.|||.||.||       ||.|       |.|||||.||.||....|
BL03128          559 AACGCAGGCAAGGGAATCCTCCTTT-------CAGGAGACATTATCCAAG    601

BSNT_02776       611 TTGCGGCGGACCGAAACTGGGTCAGCTTTATGTACAGCTACCCAAATCTC    660
                     |||.....||.||.|..|||||.||.||||||||||||||.||.|||.|.
BL03128          602 TTGTTCAAGATCGCAGGTGGGTGAGTTTTATGTACAGCTATCCGAATTTG    651

BSNT_02776       661 ATTCCCCTTCCCGCCTCCAAAGTTGAAG-AAATAGCAG-CCAAAGTAAAA    708
                     |||||.|||||||||..||||| ||.|| ||||.||.| .|||| ||||.
BL03128          652 ATTCCTCTTCCCGCCGGCAAAG-TGCAGCAAATGGCTGATCAAA-TAAAG    699

BSNT_02776       709 CCGCTTCAATTCAACCGGCTTTACAATGCTTTT------TCTAAAGTTGT    752
                     ....|||.|||||||.||||.|||||.||||||      ||   ||||| 
BL03128          700 GATGTTCCATTCAACAGGCTGTACAACGCTTTTCGCCGCTC---AGTTG-    745

BSNT_02776       753 CAAAGAAAATGCCGGCGAAGCGGTCCAGCGTTCTGCCGTACGCTATATCA    802
                       ||.||||.|||||.|||...||.|||.|.|||||.|.|.|.|||.|..
BL03128          746 --AAAAAAACGCCGGAGAATGTGTGCAGAGGTCTGCTGCAAGATATGTAG    793

BSNT_02776       803 AGGCAC-TCAACAGCGAA--CTGTTTCATACATAA    834
                     |.||.| ||||   .|||  ||||||...||.|.|
BL03128          794 AAGCGCTTCAA---GGAACGCTGTTTTCGACTTGA    825


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02776 and BL03128

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
