Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03108 and BL03132

See Amino acid alignment / Visit BSNT_03108 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_03108___yobU.1.5803.seq
#    -bsequence dna-align/BL03132.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03108___yobU-BL03132.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03108___yobU-BL03132.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03108___yobU
# 2: BL03132
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 550
# Identity:     320/550 (58.2%)
# Similarity:   320/550 (58.2%)
# Gaps:         143/550 (26.0%)
# Score: 791.0
# 
#
#=======================================

BSNT_03108___      1 ATGGGCTTTTCACATAT---AACACACTTAGACCGGAAACG--ATTTGCC     45
                     |||.|||||||.|||.|   ||.||    ||| .||.||.|  |||...|
BL03132            1 ATGAGCTTTTCTCATTTCGAAAAAC----AGA-AGGCAAAGTTATTCAGC     45

BSNT_03108___     46 GGACTGTCACAACG-GACAAGCAACGCACTGGAAATG-----ACGGAAGA     89
                     ||..|.|| ||.|| .||||||||| ||    |||||     ||.||| |
BL03132           46 GGGGTATC-CACCGTAACAAGCAAC-CA----AAATGAAGCAACCGAA-A     88

BSNT_03108___     90 AAGG-AGGATTCCGGCACTGTGGGACCAATT------CTGGAAG----CA    128
                     |||| |..|||||..|..|||||    |.||      .||.|||    |.
BL03132           89 AAGGTAAAATTCCTTCCATGTGG----AGTTTATACCGTGAAAGATTTCC    134

BSNT_03108___    129 GGAT-ATGAGCGCTCTTTTATCACAGG--CTGAA-AAAGACAAGAGCATT    174
                     |.|| |.||.|||          ||||  .|||| |.|||.|.|      
BL03132          135 GCATAAGGAACGC----------CAGGACATGAAGAGAGATACG------    168

BSNT_03108___    175 ATTGC-CTTATATTCGAATTATGA---ACAAGAGACGA-ATGGGTTTTAT    219
                     ||||| ||| |||||..|||||||   ..||||    | |||||...|||
BL03132          169 ATTGCGCTT-TATTCAGATTATGAGTCGGAAGA----ATATGGGGCGTAT    213

BSNT_03108___    220 ACGTTTTCAGTCGGAACGTT------TCAG---GAATACGACGACATTCT    260
                     ||.||||||.||||.|||||      ||||   |||.|.|          
BL03132          214 ACATTTTCAATCGGTACGTTCGCTGATCAGCATGAAAAAG----------    253

BSNT_03108___    261 TCCGGGACCATATGAAAACATTGATT----TGCCGGCTTCCGCTTACGCC    306
                       |||  ||| |||       |||||    |.||.||.||||..||.|||
BL03132          254 --CGG--CCA-ATG-------TGATTTCGCTCCCTGCATCCGAATATGCC    291

BSNT_03108___    307 GTTTTCACTTCCA-------GAATCGGTCCTATTGAAGAGATTGTGCTTG    349
                     |||||...|||.|       ||   ||    ||.||||||.|.|||.|||
BL03132          292 GTTTTTGTTTCAAGGCGGGGGA---GG----ATCGAAGAGGTCGTGTTTG    334

BSNT_03108___    350 AAACGTGGAAGGAAATTTGGACTTGGGATAAGCGGCATCTGCGCACGTTT    399
                     |.||.|||.||||.||||||||.||||.|.||....||||.||.||.|.|
BL03132          335 AGACTTGGCAGGAGATTTGGACATGGGCTGAGAAAAATCTCCGTACATAT    384

BSNT_03108___    400 ACAGGTGATTTTGAGATGTA---TGATCAAAGTGCCGCAGT---ACCACA    443
                     ||.||.||||.|||..|.||   |||.|||      |||||   .||   
BL03132          385 ACCGGAGATTATGAAGTTTATGGTGAACAA------GCAGTGAATCC---    425

BSNT_03108___    444 GCGA----GCACAAGTTAACATTTATGTAG----CGAT--AAAAAAATAA    483
                      |||    ||.||||||..|||||||.|.|    ||||  ||||||||||
BL03132          426 -CGAAAATGCTCAAGTTGCCATTTATATTGCTGTCGATCGAAAAAAATAA    474


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.