Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03107 and BL03133

See Amino acid alignment / Visit BSNT_03107 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_03107___yobT.1.5803.seq
#    -bsequence dna-align/BL03133.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03107___yobT-BL03133.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03107___yobT-BL03133.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03107___yobT
# 2: BL03133
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     485/754 (64.3%)
# Similarity:   485/754 (64.3%)
# Gaps:          92/754 (12.2%)
# Score: 1348.0
# 
#
#=======================================

BSNT_03107___      1 ATGAGAATTACTCAGTACCAAACGGTTTGGCAGCTGACTTTTTTTCCAGC     50
                     |||||.||.||.|..|...||.|.||||..||||||||||||||||| ||
BL03133            1 ATGAGGATGACCCGATTTGAATCTGTTTACCAGCTGACTTTTTTTCC-GC     49

BSNT_03107___     51 A-TTGTTTCCGGTTAATTGCTATTTAGTAGAGGAAGAAAACGAAGTC--A     97
                     | .|.|||||.||.||.||.|||||||..||.||||||.|||  |||  |
BL03133           50 ACATATTTCCTGTCAACTGTTATTTAGCCGATGAAGAAGACG--GTCTAA     97

BSNT_03107___     98 CCCTTATTGATGCCGCACTGCCAGGCAGCTATAAAGGGATTATTCAA-GC    146
                     |..|.||||||.|.|...|.||...||||.|.|..|||||| ||.|| ||
BL03133           98 CATTAATTGATACAGGGATTCCGATCAGCAAAACCGGGATT-TTAAAGGC    146

BSNT_03107___    147 TGTGAATCAGCTTGGAAAACCGCTTCAGCATATTTTACTGACTCATGCAC    196
                     ||.|.||||.||..|.||.|||.||.|||..|||||.|||||.|||||.|
BL03133          147 TGCGGATCACCTCCGCAAGCCGATTAAGCGGATTTTGCTGACCCATGCCC    196

BSNT_03107___    197 ATGGGGACCATGTCGGATCACTGGA-------TACATTGGCACAAACATT    239
                     |..|.|||||||||||.||.||.||       |||     ||||..|  |
BL03133          197 ACAGCGACCATGTCGGTTCGCTTGACGCGCTGTAC-----CACAGCC--T    239

BSNT_03107___    240 TCCGCATGCAAAG--GTCATGATCTCGGAACGGGATTCA-TTCTTGCTCC    286
                     ||||..||..|||  ||||  ||.||.|||||||||.|| .|| ||.|..
BL03133          240 TCCGGGTGTGAAGGTGTCA--ATATCTGAACGGGATGCACGTC-TGTTAA    286

BSNT_03107___    287 AAGGTGACACATCCTTGCGGCAAGATGAGCCGCAGACGCCTATA---AAA    333
                     ||||.||.|||....|||.|.|||..||| |||.||     |||   |||
BL03133          287 AAGGCGATACAAAGATGCTGGAAGGGGAG-CGCGGA-----ATAATCAAA    330

BSNT_03107___    334 GGAGGTATTCCGAAACACATACAA-ACAAAGCCTCACCAAC-TGCTGACG    381
                     |||||..||||||||.|||| ||| |||||.|||.| .|.| |..|.|.|
BL03133          331 GGAGGCGTTCCGAAAAACAT-CAAGACAAATCCTGA-TATCTTTTTAAAG    378

BSNT_03107___    382 GGCGGTGAAACAATTGGTTCTCTGCTTGCCATTCCAACACCGGGCCATAC    431
                     |..||.||.|.|||.|||||..||||..|..||.||.||||.||.|||||
BL03133          379 GAAGGAGACAGAATCGGTTCATTGCTGACTGTTTCATCACCCGGGCATAC    428

BSNT_03107___    432 ACCGGGCAGCATGTCATTTCTTGATACAAGAAACGGCACTT-TAATAGCA    480
                     .||.||||||||.||.|||.|||||..|||||.|||| ||| |.||||..
BL03133          429 GCCTGGCAGCATTTCGTTTTTTGATGAAAGAAGCGGC-CTTCTCATAGTC    477

BSNT_03107___    481 GGAGATGCGTTTCAGTTGCGCG--GAGGAATCGCTGTATCAGGTCAGATA    528
                     ||.|||||||..||  |.||||  |.||.||..|.|||||.||.||..||
BL03133          478 GGTGATGCGTACCA--TACGCGAAGCGGCATGACGGTATCGGGGCATTTA    525

BSNT_03107___    529 AAATGGACGTTTCCTTTTCCCGCCTTCGCCACATGGAATAAGGAGGAGGC    578
                     ||.....|.|||||||||||.||.||.|||||||||.|.||.||....||
BL03133          526 AAGCTTTCATTTCCTTTTCCGGCTTTGGCCACATGGGACAAAGAAATCGC    575

BSNT_03107___    579 CATCAAAAGCGCACAATTGCTCGCCGAT---------AAGGCGCCTTCCT    619
                     ..|..|||||||||||..|||....|||         ||||||       
BL03133          576 TTTAGAAAGCGCACAAAAGCTGTTAGATTTAAAACCAAAGGCG-------    618

BSNT_03107___    620 GTCTCGCTGTCGGACATGGAAA---TTTCCTGAGATCACCCG---CAGAG    663
                       ||.||.|.|||.||.||..|   |.|||    ||.|.|||   || ||
BL03133          619 --CTTGCCGCCGGCCACGGCGATCTTGTCC----ATGATCCGGCTCA-AG    661

BSNT_03107___    664 CGGATGAGACA---GGCAATCCAA---------AAAGCAAA---GAAAGG    698
                     | |||||.|.|   ||.||.|.||         |||..|||   ||||||
BL03133          662 C-GATGAAAAAAGCGGTAAACGAAGCATACATCAAATTAAACAGGAAAGG    710

BSNT_03107___    699 ATGA    702
                     ||||
BL03133          711 ATGA    714


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