Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03106 and BL03134

See Amino acid alignment / Visit BSNT_03106 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_03106___yobS.1.5803.seq
#    -bsequence dna-align/BL03134.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03106___yobS-BL03134.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03106___yobS-BL03134.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03106___yobS
# 2: BL03134
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity:     358/655 (54.7%)
# Similarity:   358/655 (54.7%)
# Gaps:         161/655 (24.6%)
# Score: 767.0
# 
#
#=======================================

BSNT_03106___      1 ATGTCACCAAGAATAGGTTTGACCCA-AAAAATG-ATTA-TAGACGCTGC     47
                     .||||.||..||||.|||||||   | |||.|.| |.|| |.||.|||||
BL03134            1 TTGTCTCCGCGAATCGGTTTGA---ATAAAGACGCAGTATTGGAAGCTGC     47

BSNT_03106___     48 AGCGGAGATTGCCGATCAGGAAGGGGTAAATGGTGTCTCACTTGCGGCAC     97
                     .||.|...|.||.|||.|||||||..|..|||..||..|.|||||..|||
BL03134           48 TGCAGCTCTGGCTGATGAGGAAGGCATTCATGAAGTGACGCTTGCTTCAC     97

BSNT_03106___     98 TTTCTAAAAAAATGAATGTGCGTC----CCCCGTCATTGTATAACCATAT    143
                     ||||.||||...|||||    |||    |.|||||..||||.||.|||||
BL03134           98 TTTCCAAAAGGCTGAAT----GTCAAATCTCCGTCTCTGTACAATCATAT    143

BSNT_03106___    144 CAACGGGCTGCAAGCGA-TCAGAGCA-GAACTTGCTGTTAGAGGACTGAC    191
                     .||.||..||  |.||| |.|..|.| |||||.||..||...||..||||
BL03134          144 AAAAGGATTG--AACGACTTACGGAAGGAACTCGCACTTTACGGCTTGAC    191

BSNT_03106___    192 AAAGCTTTTTGATCAAATGGCGGACTCCG--TAACCGAA----CGAAAGG    235
                     .|..||||.|||..|.||||    ||.||  ||.||..|    ||||   
BL03134          192 GATTCTTTATGAAAACATGG----CTTCGGCTATCCAGAGAGCCGAA---    234

BSNT_03106___    236 GAGATTCCGCGATGCTTTC-----TTTAGCACATGCATATGTTGATTTTG    280
                     |||..||    |.|||.||     ..|.||.|||||.|||.|.|.|||||
BL03134          235 GAGGATC----AGGCTGTCAGCCAAATGGCTCATGCCTATCTCGCTTTTG    280

BSNT_03106___    281 CAATTGAAAA---TCCCGGATATTATGAAGCGGCTCTGCTT--AAGGTTC    325
                     |.|   ||||   .||.||...|||||||||..||.|..||  ||  |.|
BL03134          281 CCA---AAAACAGACCGGGGCTTTATGAAGCAACTTTTATTGCAA--TGC    325

BSNT_03106___    326 AGGACAAACGGATGGAAATCGTCTCTGACCAAATTGTCTGTCTTGTGACG    375
                     ..||..||  ||||||   ||.|| ||||.|        |.||.|.|||.
BL03134          326 CCGATGAA--GATGGA---CGGCT-TGACGA--------GGCTGGAGACA    361

BSNT_03106___    376 AA-----------GCTGCT---CAT--TGAAAACGGCTATGCA---AG-T    405
                     .|           |.||||   |.|  |||||  |.|||| ||   || |
BL03134          362 GAGTCCTCGCCTTGGTGCTTTCCGTTCTGAAA--GACTAT-CATTTAGAT    408

BSNT_03106___    406 GA-AAAGACTGCCATTCATGCGACAAGGGGGCTCAGAAGCCTGCTGCATG    454
                     || .||| |.||.|||||||||...||.||..|.||||||.|.|||||||
BL03134          409 GATGAAG-CCGCGATTCATGCGGTCAGAGGCTTGAGAAGCATCCTGCATG    457

BSNT_03106___    455 GCTTTACTGTTTTAATC--GCAA-AAGAAGCATTTGAACG----------    491
                     |.|||.|.|   .|.||  |||| |.||.||.||    ||          
BL03134          458 GATTTGCCG---CACTCAGGCAACACGATGCGTT----CGGTCTTCCTTA    500

BSNT_03106___    492 TGAGGAGGACATTTTAGAAAGCCTGTCAT-TTTCAATTCG----------    530
                     |||.|..||      ||||||.|| |.|| |..||||.||          
BL03134          501 TGATGTAGA------AGAAAGTCT-TGATCTGACAATCCGCGTCTTCTTA    543

BSNT_03106___    531 ---GACATTTTTGTCAGGATTAT------TAATAAATAATAAAAATATTA    571
                        |.||||..||||     |||      .|||||               
BL03134          544 AAAGGCATTGCTGTC-----TATCAGACCGAATAA---------------    573

BSNT_03106___    572 TGTAA    576
                          
BL03134          573 -----    573


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