Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04725 and BL03143
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04725___yumC.1.5803.seq
# -bsequence dna-align/BL03143___yumC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04725___yumC-BL03143___yumC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04725___yumC-BL03143___yumC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04725___yumC
# 2: BL03143___yumC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 781/1007 (77.6%)
# Similarity: 781/1007 (77.6%)
# Gaps: 16/1007 ( 1.6%)
# Score: 3009.5
#
#
#=======================================
BSNT_04725___ 1 ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACC 50
|||||.||.||.|||||.||.||||||||.||||||||.||.||.||.||
BL03143___yum 1 ATGCGTGAAGACACAAAAGTATATGATATCACAATTATCGGGGGCGGCCC 50
BSNT_04725___ 51 GGTCGGCTTATTCACCGCTTTTTACGGCGGGATGAGACAGGCAAGAGTCA 100
.||||||||.||.|||||.|||||||||||.|||.|.||.||.||.||||
BL03143___yum 51 TGTCGGCTTGTTTACCGCATTTTACGGCGGAATGCGGCAAGCGAGCGTCA 100
BSNT_04725___ 101 AAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTAGCGCCCTATAC 150
|||||||.|||||||||||.||.||||||||.|||||...|||..|.||.
BL03143___yum 101 AAATTATTGAAAGCCTGCCGCAACTCGGCGGTCAGCTGTCCGCTTTGTAT 150
BSNT_04725___ 151 CCTGAGAAGTATATATATGATGTAGCGGGATTCCCGAAAATCCGTGCGCA 200
||.||.||.||.|||||.||||||||.||.|||||.||||||||.||.||
BL03143___yum 151 CCCGAAAAATACATATACGATGTAGCCGGGTTCCCTAAAATCCGCGCTCA 200
BSNT_04725___ 201 AGAGCTTATCAATAACCTAAAAGAGCAAATGGCAAAATTCGACCAAACCA 250
.|||||..||.|.||..||||||||||||||||.||||||||.||.|||.
BL03143___yum 201 GGAGCTGGTCGACAATTTAAAAGAGCAAATGGCGAAATTCGATCAGACCG 250
BSNT_04725___ 251 TTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCGTG 300
|||||.||||.|||||.||.|||...|||||.||||||||.|||||..|.
BL03143___yum 251 TTTGTTTGGAACAAGCCGTCGAAAGCGTTGAAAAACAAGCAGACGGTATT 300
BSNT_04725___ 301 TTTAAGCTTGTAACAAATGAAGAAACCCACTACTCTAAAACGGTCATCAT 350
||.||.||.||.||.||..||||||.||||||.|||||||||||.||.||
BL03143___yum 301 TTCAAACTCGTCACCAACAAAGAAATCCACTATTCTAAAACGGTGATTAT 350
BSNT_04725___ 351 CACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAATG 400
.||.||.||||||||.||||||.|.|||||||||||.||.||||||..||
BL03143___yum 351 TACAGCCGGAAACGGAGCATTCCAGCCGAGAAAGCTCGAGCTTGAATCTG 400
BSNT_04725___ 401 CCGAGCAGTAT----GAAGGCAAAAACCTCCATTACTTCGTTGATGATCT 446
| .|||..|| |||.|| ||||||.||||||||..|.||||||||
BL03143___yum 401 C--GGCACAATTCGAGAATGC--AAACCTTCATTACTTTATAGATGATCT 446
BSNT_04725___ 447 GCAAAAATTCGCCGGCAGACGCGTTGCGATCCTTGGCGGTGGAGATTCCG 496
|.|..||||.||.||||..|||||||||.|..|.|||||.||.||.||||
BL03143___yum 447 GAATCAATTTGCGGGCAAGCGCGTTGCGGTATTGGGCGGCGGCGACTCCG 496
BSNT_04725___ 497 CGGTTGACTGGGCGCTTATGCTTGAGCCGATCGCAAAAGAAGTATCGATC 546
|.||.|||||||||||.|||||.||.||||||||||||||.||.||.||.
BL03143___yum 497 CCGTCGACTGGGCGCTCATGCTGGAACCGATCGCAAAAGAGGTGTCAATT 546
BSNT_04725___ 547 ATTCACCGCCGTGACAAGTTCCGTGCGCACGAGCACAGTGTGGAAAACCT 596
|||||.|||||.||.||.|||||.||.|||||||||||.||.|||||
BL03143___yum 547 ATTCATCGCCGCGATAAATTCCGCGCACACGAGCACAGCGTCGAAAA--- 593
BSNT_04725___ 597 TCATGCG----TCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGGAG 642
|.|||| ||.||.||.|||||..|||||||.||.||.||..|.|||
BL03143___yum 594 -CTTGCGCAATTCTAAAGTCAATGTATTGACACCGTTTGTTCCGACCGAG 642
BSNT_04725___ 643 CTGATCGGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGG 692
|||||||||...||...||||||||||.|.||..||||.|||||||||||
BL03143___yum 643 CTGATCGGCAGCGAGCGAATCGAACAGATCGTCATTGAGGAAGTGAAAGG 692
BSNT_04725___ 693 CGACCGCAAAGAGATTTTAGAAATTGATGACTTAATCGTCAACTACGGTT 742
|||..|.|||||.||..|.||..|.||.||..|.||||||||||.|||||
BL03143___yum 693 CGAGAGAAAAGAAATCATCGATGTCGACGATGTGATCGTCAACTTCGGTT 742
BSNT_04725___ 743 TCGTTTCATCTCTTGGACCGATCAAAAACTGGGGTCTGGACATCGAGAAA 792
|.|||||||||||.|||||.||||||||||||||.||.||.|||||||||
BL03143___yum 743 TTGTTTCATCTCTCGGACCAATCAAAAACTGGGGGCTTGAAATCGAGAAA 792
BSNT_04725___ 793 AATTCCATTGTCGTAAAATCAACAATGGAAACAAATATCGAAGGCTTCTT 842
|||||.||.|||||.||.||.|||||||||||.||.|||||.||.||||.
BL03143___yum 793 AATTCGATCGTCGTCAAGTCCACAATGGAAACGAACATCGAGGGATTCTA 842
BSNT_04725___ 843 TGCAGCAGGTGACATTTGTACATACGAAGGAAAAGTCAACCTGATTGCCA 892
||||||.||.||.||.||.|||||.|||||.||||||||.||||||||.|
BL03143___yum 843 TGCAGCCGGCGATATCTGCACATATGAAGGGAAAGTCAAGCTGATTGCGA 892
BSNT_04725___ 893 GCGGCTTCGGTGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATG 942
||||.||.|||||.||.|||||.||.||.|||||.||.||.|||||.|||
BL03143___yum 893 GCGGATTTGGTGAAGCGCCGACCGCTGTCAACAATGCAAAAGCTTATATG 942
BSNT_04725___ 943 GACCCGAAAGCCCGCGTACAGCCTCTTCACTCAACAAGTCTTTTTGAAAA 992
||.||.|||||.||.||.|||||.||.|||||.|||||..|.||||||||
BL03143___yum 943 GATCCTAAAGCGCGTGTGCAGCCGCTGCACTCTACAAGCATGTTTGAAAA 992
BSNT_04725___ 993 TAAATAA 999
.||||||
BL03143___yum 993 CAAATAA 999
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