Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01544 and BL03177

See Amino acid alignment / Visit BSNT_01544 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01544___yhcL.1.5803.seq
#    -bsequence dna-align/BL03177___yhcL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01544___yhcL-BL03177___yhcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01544___yhcL-BL03177___yhcL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01544___yhcL
# 2: BL03177___yhcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1438
# Identity:    1055/1438 (73.4%)
# Similarity:  1055/1438 (73.4%)
# Gaps:          98/1438 ( 6.8%)
# Score: 3896.5
# 
#
#=======================================

BSNT_01544___      1 TTGGAGACTTTACTGGTTGTATTACATGTATTTATT-TTATTTTTACTTA     49
                                         ||.|||| |||||.|| |||||..|| |||
BL03177___yhc      1 --------------------ATGACAT-TATTTGTTGTTATTAATA-TTA     28

BSNT_01544___     50 TCTTAGGGCTC------------------TTTGTTATGCAGAAAAAACAT     81
                     ||.|...||||                  |.|.|.|||||.|||||.|||
BL03177___yhc     29 TCGTCATGCTCGGCCTGATGGCGCTCCTTTATATGATGCAAAAAAAGCAT     78

BSNT_01544___     82 GTTTCCTTCTCTAAACGTGTATTTACTGCGCTGGGGCTGGGGATTGTATT    131
                     |||||.||.|||||.||.||||||||.||.|||||..|.||.|||||.||
BL03177___yhc     79 GTTTCTTTTTCTAAGCGGGTATTTACCGCTCTGGGAATCGGAATTGTTTT    128

BSNT_01544___    132 CGGATTTGCGCTT--CAGCTGATTTACGGCCCGACTTCAAATATAGTC-A    178
                     .|||||  |||||  ||..|.||.||.||..||.|||||.|.|    | |
BL03177___yhc    129 TGGATT--CGCTTTGCATTTTATATATGGTTCGTCTTCAGAAA----CGA    172

BSNT_01544___    179 TT---CAAACAGCCGACTGGTTTAATATTGCCGGGGGCGGATATGTCAAA    225
                     ||   ||.||..|.||.|||||||||||.||.||.|||||.|||||||| 
BL03177___yhc    173 TTACGCAGACTTCTGATTGGTTTAATATCGCAGGCGGCGGCTATGTCAA-    221

BSNT_01544___    226 TTGCTT---CAGATGGTTGTCATGCCGCTCGTCTTTATTTCGATTCTCGG    272
                       ||||   ||||||.|.||.||||||||.||.||.||.||||||.|.||
BL03177___yhc    222 --GCTTTTGCAGATGATCGTTATGCCGCTTGTATTCATCTCGATTTTGGG    269

BSNT_01544___    273 CGCCTTTACAAAGCTGAAGCTGACAAAAAATCTTGGGAAAATCAGCGGTT    322
                     .||.|||||||||||.||||||||..|.|||.|.||.|||||||||||.|
BL03177___yhc    270 TGCTTTTACAAAGCTTAAGCTGACGCACAATATCGGAAAAATCAGCGGAT    319

BSNT_01544___    323 TGATTATCGGGATTTTAGTAGCAACAACAGCAGTTGCTGCAGCTGTCGGT    372
                     ||||.||||||.|.|||.|.||.||.|||||.||.|||||.||.||.|||
BL03177___yhc    320 TGATCATCGGGCTCTTAATCGCGACGACAGCCGTCGCTGCTGCGGTGGGT    369

BSNT_01544___    373 ATCGCGTCCGCGCTTTCATTTGATCTGCAGGCGATTCAGGTTGACCAAGG    422
                     |||||||||||||||.|.||.||.||||||||..|.||.||.||||||||
BL03177___yhc    370 ATCGCGTCCGCGCTTGCTTTCGACCTGCAGGCCGTCCATGTGGACCAAGG    419

BSNT_01544___    423 AAGTACAGAGCTTTCACGGGGACA-----------GGAGCTTCAGCAGAA    461
                         .|||       .|||.||||           |||.||..|.|||||
BL03177___yhc    420 ----CCAG-------GCGGAGACAATGAGAGGGGCGGAACTCGAACAGAA    458

BSNT_01544___    462 ATCAGAGGATATGACAGCGAAAACGCTGCCGCAGCAGATTGTTGAACTGC    511
                     |||..||||.|||..|||.||||||||.||||||||.|||||.||.||.|
BL03177___yhc    459 ATCGCAGGACATGGAAGCCAAAACGCTTCCGCAGCAAATTGTCGAGCTTC    508

BSNT_01544___    512 TGCCTGGAAACCCGTTTTTAGATTTCACGGGAGCTAGACCGACTTCAACA    561
                     |.||||||||.|||||||||||.||.||.|||||.||||||||.|||||.
BL03177___yhc    509 TTCCTGGAAATCCGTTTTTAGACTTTACTGGAGCAAGACCGACATCAACG    558

BSNT_01544___    562 ATCGCTGTCGTTATTTTTGCCGCTTTCCTTGGAGTGGCATTCCTCGGAGT    611
                     |||||.||.|||||||||||.|||||||||||..|.||.|..|||||.||
BL03177___yhc    559 ATCGCAGTTGTTATTTTTGCGGCTTTCCTTGGGATCGCTTATCTCGGGGT    608

BSNT_01544___    612 AAAACACAAACAGCCGGAACAGGCAGAAACATTT-AAAAAACTGGTTGAT    660
                     .||.|..||||||||.|||||.||.| |||.||| ||||||.||||||||
BL03177___yhc    609 CAACCGAAAACAGCCTGAACAAGCTG-AACTTTTCAAAAAAATGGTTGAT    657

BSNT_01544___    661 GCCGTTTATGCCATTGTCATGCGTGTTGTCACACTCATTTTGAGACTGAC    710
                     |||||.|||||.||..|.||||||||.|||||..|.|||.||||..||||
BL03177___yhc    658 GCCGTGTATGCGATCATTATGCGTGTGGTCACCTTAATTCTGAGGTTGAC    707

BSNT_01544___    711 GCCTTATGGGGTGCTGGCCATCATGACAAAAACAATTGCCACGAGTGATC    760
                     ||||||.||.||..||||.||||||||||||||.|||||.|||||.||.|
BL03177___yhc    708 GCCTTACGGTGTATTGGCGATCATGACAAAAACGATTGCAACGAGCGACC    757

BSNT_01544___    761 TTGACAGCATTCTAAAACTGGGCATGTTCGTGATTGCTTCATATGCCGCG    810
                     |.|||||||||...|||||.||||..||.||.||.|||||||||||.|||
BL03177___yhc    758 TCGACAGCATTGCCAAACTCGGCAAATTTGTCATCGCTTCATATGCGGCG    807

BSNT_01544___    811 TTAATCACTATGTTTATCATTCATTTGCTGCTGCTGACGTTCAGCGGCTT    860
                     .|.|||...|||||.||||||||..|||||||..|.||.||||||||.||
BL03177___yhc    808 CTGATCGTCATGTTCATCATTCACCTGCTGCTCATTACATTCAGCGGTTT    857

BSNT_01544___    861 GAATCCGGTGATTTATTTGAAAAAAGCGGTGCCTGTACTTGTATTTGCAT    910
                     .|||||.||.|..||.||||||||.|||.|.||.||.||||||||.||.|
BL03177___yhc    858 AAATCCTGTCACATACTTGAAAAAGGCGTTTCCAGTTCTTGTATTCGCGT    907

BSNT_01544___    911 TTACGTCAAGGTCTAGCGCAGGTGCTTTACCGCTGAATATTAAAACACAG    960
                     ||||.|||||.||.||||||||.|||||.||||||||.||||||||.|||
BL03177___yhc    908 TTACATCAAGATCAAGCGCAGGCGCTTTGCCGCTGAACATTAAAACGCAG    957

BSNT_01544___    961 AGAAGCATGGGTGTACCGGAGGGAATCGCAAACTTTGCCGGTTCGTTCGG   1010
                     .|||||.|.|||||.||.||.||.||.||.|||||||||||.||.|||||
BL03177___yhc    958 CGAAGCCTTGGTGTTCCAGAAGGCATTGCGAACTTTGCCGGATCCTTCGG   1007

BSNT_01544___   1011 TCTTTCGATCGGCCAAAATGGATGTGCCGGCATTTATCCTGCGATGCTGG   1060
                     .||.||.|||||.|||||.|||||||||||||||||.|||||.|||||.|
BL03177___yhc   1008 ACTGTCCATCGGTCAAAACGGATGTGCCGGCATTTACCCTGCAATGCTCG   1057

BSNT_01544___   1061 CGATGATGATTGCTCCGACTGTCGGCCAAAATCCATTTGACCCGGTGTTT   1110
                     ||||.|||||.||.||||||||||||||||||||..||||.|| ||..||
BL03177___yhc   1058 CGATTATGATCGCGCCGACTGTCGGCCAAAATCCGCTTGATCC-GTCATT   1106

BSNT_01544___   1111 ATT-ATCACTGTTATCGCAGTCGTTGCCATCAGCTCCTTCGGTGTTGCCG   1159
                     .|| .||||.|||||||||||.|||||.||||||||.|||||.||.||.|
BL03177___yhc   1107 CTTGTTCACGGTTATCGCAGTTGTTGCGATCAGCTCTTTCGGAGTGGCAG   1156

BSNT_01544___   1160 GAGTCGGCGGCGGAGCCACATTCGCGGCGCTTCTTGTTTTATCATCATTA   1209
                     |.||||||||.||.||.||.||.||.||||||||.||..|.||..|||||
BL03177___yhc   1157 GCGTCGGCGGAGGTGCGACCTTTGCAGCGCTTCTCGTCCTTTCGGCATTA   1206

BSNT_01544___   1210 AACATGCCTGTCGCGCTTGCTGGTTTGTTAATCTCAATTGAACCGTTAAT   1259
                     |||||||||||.||||||||.||..|..|.||.||..||||.|||.|.||
BL03177___yhc   1207 AACATGCCTGTAGCGCTTGCCGGACTTCTGATTTCTGTTGAGCCGCTGAT   1256

BSNT_01544___   1260 CGACATGGGGCGTACTGCTTTGAATGTCAGCGGAAGCATGACATCCGGTC   1309
                     |||||||||||||||.|||.|.|||||||||||.||||||||.||.||.|
BL03177___yhc   1257 CGACATGGGGCGTACGGCTCTCAATGTCAGCGGCAGCATGACGTCAGGAC   1306

BSNT_01544___   1310 TTATTACAAGTAAGGTCACAAAGGAAATTGATCAAGGGGCATTTCATGAT   1359
                     ||.|.||.||.||.||.|||||.||..||||..|||...|.|..||.||.
BL03177___yhc   1307 TTGTCACGAGCAAAGTGACAAATGAGCTTGAAAAAGACACGTACCAAGAC   1356

BSNT_01544___   1360 C-----AATCCAGAGTGATTGAAGCTGAAGAAGCGTAA   1392
                     |     |||     .|.||||||||   |||||.||||
BL03177___yhc   1357 CGTACAAAT-----ATCATTGAAGC---AGAAGTGTAA   1386


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