Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01502 and BL03205

See Amino acid alignment / Visit BSNT_01502 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_01502___ssuA.1.5803.seq
#    -bsequence dna-align/BL03205___ssuA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01502___ssuA-BL03205___ssuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01502___ssuA-BL03205___ssuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01502___ssuA
# 2: BL03205___ssuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity:     733/1063 (69.0%)
# Similarity:   733/1063 (69.0%)
# Gaps:         137/1063 (12.9%)
# Score: 2492.0
# 
#
#=======================================

BSNT_01502___      1 ATGAAAAAAGGACTCATTGTA-----TTGGTTGCCGTTATTTTTCTGCTC     45
                     .||||||||.|.| |.|||||     |.||.||||    |.||.||.||.
BL03205___ssu      1 GTGAAAAAATGGC-CGTTGTATGTGCTGGGCTGCC----TGTTGCTTCTT     45

BSNT_01502___     46 GCAGGCTGTGGAGCAAATGGAGCCAGCGGTGACCACAAACAATTGAAGG-     94
                     ||.||||||..|||      |||||           ||.|||.|||||| 
BL03205___ssu     46 GCGGGCTGTTCAGC------AGCCA-----------AATCAAGTGAAGGG     78

BSNT_01502___     95 ---------------------AAATTCGTATTGGTATTCAGCAAAGCTTA    123
                                          ||..|||.|.||     ||||||||||||
BL03205___ssu     79 GGCGGAGATTTAAAAGAGATCAACATCGGAGTG-----CAGCAAAGCTTA    123

BSNT_01502___    124 AGCCCGCTTTTGATC---GCAAAAGAAAAAGGCTGGTTCGAAGATGCATT    170
                     ||||||   |||.||   ||.|||||||||||||||||.|||.|.|..||
BL03205___ssu    124 AGCCCG---TTGCTCCTTGCGAAAGAAAAAGGCTGGTTTGAAAAAGAGTT    170

BSNT_01502___    171 TGAAAAAGAAGGCATCAAAGTGAAATGGGTGGAGTTTCAAAGCGGTCCGC    220
                     .|.|||||||||.||.||||||||||||...|||||||||||||||||||
BL03205___ssu    171 CGCAAAAGAAGGAATTAAAGTGAAATGGACAGAGTTTCAAAGCGGTCCGC    220

BSNT_01502___    221 CCCAATTTGAAGGCCTTGCGGCAGACAAACTTGATTTTTCTCAAGTCGGT    270
                     |.||.||||||||.|||||.||.||.|||||.||||||||.||||||||.
BL03205___ssu    221 CGCAGTTTGAAGGTCTTGCCGCGGATAAACTCGATTTTTCCCAAGTCGGA    270

BSNT_01502___    271 AATTCGCCTGTGATCGCTGGACAGGCGGCAGGCATTGACTTTAAAGAAAT    320
                     |||||.||.||||||||.||.||||||||.||||||||.|||||||||||
BL03205___ssu    271 AATTCACCGGTGATCGCAGGGCAGGCGGCTGGCATTGATTTTAAAGAAAT    320

BSNT_01502___    321 CGGTTTGTCTCAGGACGGCTTGAAAGCAAACGGCATCCTTGTCAATCGAA    370
                     |||..|.|||||.|||||.||.||.||.||||||||.|||||.||   ||
BL03205___ssu    321 CGGCCTTTCTCAAGACGGTTTAAAGGCGAACGGCATTCTTGTGAA---AA    367

BSNT_01502___    371 A---CAGCGGCATTCAAGACGTTAAGGGCTTAAAGGGGAAGAAAATTGCA    417
                     |   .|||||.||..|.|||.|.||.|..||.||.||.|||||..|.||.
BL03205___ssu    368 AAGGGAGCGGAATCGATGACATAAAAGATTTGAAAGGAAAGAAGGTGGCG    417

BSNT_01502___    418 GTCGCCAAAGGCAGCAGCGGGTTTGATTTTTTGTATAAAGCGCTTGATCA    467
                     ||.||.|||||||||||||||||.|||||..|||||||||.|.|.|||.|
BL03205___ssu    418 GTGGCAAAAGGCAGCAGCGGGTTCGATTTCCTGTATAAAGTGATCGATAA    467

BSNT_01502___    468 AGTGGGGTTGTCAGCTAAC-GATGTGACAATTATTCAGCTTCAGCCTGAT    516
                     ||.|||..|| .|||.||| ||.||.|..||.|||||||||||||||||.
BL03205___ssu    468 AGCGGGTCTG-AAGCCAACAGACGTCAACATCATTCAGCTTCAGCCTGAC    516

BSNT_01502___    517 GAAGCAGCTT--CCGCATTTGAAAACGGATCTGTTGATGCCTGGTCCATT    564
                     |||||  |.|  |.||||||||.|.||||.|..||||.||||||||.|||
BL03205___ssu    517 GAAGC--CATGCCGGCATTTGACAGCGGAGCGATTGACGCCTGGTCGATT    564

BSNT_01502___    565 TGGGAGCCGTACTTGTC-CTTAGAAACAATGAA-----ACACGGAGCAAA    608
                     ||||||||||..||||| |||| ||||.||.||     ||.|||| ||.|
BL03205___ssu    565 TGGGAGCCGTTTTTGTCTCTTA-AAACGATCAAAAGTGACGCGGA-CATA    612

BSNT_01502___    609 AATCCTTG--TGAACGGAGAAAGCACAGATTTA----TATTCACCGGGTT    652
                          |||  || ||||.||    |||.||..|    |||||.|||||||
BL03205___ssu    613 -----TTGGTTG-ACGGGGA----ACAAATCGACAAGTATTCCCCGGGTT    652

BSNT_01502___    653 TTACTTTAGTAAGAA-CAAAGTTTTCAGAAGAGCATCCAGACGAAGTGGT    701
                     ||||..|.|||.||| |||| ||..|.|||.|||||||.||.||.|||.|
BL03205___ssu    653 TTACGCTTGTACGAAGCAAA-TTCGCCGAACAGCATCCGGATGAGGTGAT    701

BSNT_01502___    702 CCGTTTTCTGAAGGTGTTTAATAAAGCCGTTGTATGGCAAAAGGAA--CA    749
                     .||||||||||||||||.|.|.||.|||||...||||||.||  ||  ||
BL03205___ssu    702 TCGTTTTCTGAAGGTGTATGACAAGGCCGTGAAATGGCAGAA--AACCCA    749

BSNT_01502___    750 TCTGGGTGAAGC------AGCGGACTTATATTCTGACATTAAAGATCTCG    793
                     |..|...|||||      ||||      ||..|..|.||||||.|.||||
BL03205___ssu    750 TAAGAAAGAAGCGGTTGAAGCG------TACGCAAAAATTAAAAACCTCG    793

BSNT_01502___    794 ATAAAAAGGTCGTCGAAAATGTGCTGAAAAATACTGAACCTCTGAATGAG    843
                     |.|||.|||||||.|||||.||||||||.||.||.|||||..|.||||||
BL03205___ssu    794 ACAAAGAGGTCGTTGAAAACGTGCTGAATAACACCGAACCGTTAAATGAG    843

BSNT_01502___    844 GTCATCAGTGACGACATTGTAAAAGCGCAGCAGGAAACAGCAGATTTTCA    893
                     ...||||..|||..|||..|..||.|.||||||||.||.||.||||||||
BL03205___ssu    844 CCGATCACAGACCGCATCATTCAAACACAGCAGGAGACCGCCGATTTTCA    893

BSNT_01502___    894 ATTTCGAAC-----AAAGGCGATAGATAAGAAGATTGATGTGAAGGATGT    938
                     ||     ||     |||.|||||..|.||..||||||||||.||.||.||
BL03205___ssu    894 AT-----ACAAATTAAAAGCGATTAACAAAGAGATTGATGTAAAAGAAGT    938

BSNT_01502___    939 TGTCGATAA--CAGTTTTATCAAAAAAGCATTAAAGGAACATTCCTCAGG    986
                     .|||||.||  ||  |||||.||||||||..|.||.||         |||
BL03205___ssu    939 GGTCGACAATTCA--TTTATAAAAAAAGCGCTGAAAGA---------AGG    977

BSNT_01502___    987 AGGTGATCAATGA    999
                     ||.|||..|||||
BL03205___ssu    978 AGATGACAAATGA    990


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