Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02798 and BL03237

See Amino acid alignment / Visit BSNT_02798 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02798___spoVK.1.5803.seq
#    -bsequence dna-align/BL03237___spoVK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02798___spoVK-BL03237___spoVK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02798___spoVK-BL03237___spoVK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02798___spoVK
# 2: BL03237___spoVK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity:     752/974 (77.2%)
# Similarity:   752/974 (77.2%)
# Gaps:          16/974 ( 1.6%)
# Score: 2892.5
# 
#
#=======================================

BSNT_02798___      1 ---TTGGAGCGCGCTGTGACTTATAAAAACAACGGACAGATCAACATTAT     47
                        |||||..|.|||||.||||||||||||||||||||.|||||.||.||
BL03237___spo      1 GTGTTGGAAAGGGCTGTTACTTATAAAAACAACGGACAAATCAATATCAT     50

BSNT_02798___     48 TCTGAACGGGCAAAAGCAGGTGCTGACGAATGCTGAGGCAGAAGCGGAAT     97
                     ..|||||||.|||||||||||..||.|.|||.|.|||||.|||||.||||
BL03237___spo     51 ATTGAACGGTCAAAAGCAGGTTTTGGCCAATTCAGAGGCTGAAGCCGAAT    100

BSNT_02798___     98 ATCAGGCTGCATTGCAAAAAAACGAAGCAAAGCACGGCATTTTGAAGGAA    147
                     |||||||.|||.||||||||||.|||||.||.|||.|||||.||||.|||
BL03237___spo    101 ATCAGGCCGCACTGCAAAAAAATGAAGCCAAACACAGCATTCTGAAAGAA    150

BSNT_02798___    148 ATCGAAAAAGAAATGAGCGCATTAGTTGGGATGGAGGAAATGAAACGCAA    197
                     ||.||||..|||||||.|.|..|.||.||.||||||||||||||.|||||
BL03237___spo    151 ATTGAAAGGGAAATGAACACGCTGGTCGGAATGGAGGAAATGAAGCGCAA    200

BSNT_02798___    198 CATCAAGGAAATATACGCTTGGATTTTTGTGAACCAAAAACGCGCGGAGC    247
                     .|||||||||||.|||||.||||||||.||.||..||||.||||..||.|
BL03237___spo    201 TATCAAGGAAATCTACGCCTGGATTTTCGTTAATAAAAAGCGCGAAGAAC    250

BSNT_02798___    248 AAGGCTTGAAGGTTGGAAAGCAAGCGCTGCACATGATGTTTAAAGGAAAT    297
                     |||||.|.||||..|||||.||.|||||.|||||||||||.|||||||||
BL03237___spo    251 AAGGCCTTAAGGCCGGAAAACAGGCGCTTCACATGATGTTCAAAGGAAAT    300

BSNT_02798___    298 CCGGGAACGGGAAAAACGACGGTTGCACGGCTCATCGGCAAGCTGTTCTT    347
                     ||||||||.|||||||||||.||.||..||||.|||||||.|||.||.|.
BL03237___spo    301 CCGGGAACCGGAAAAACGACCGTCGCCAGGCTGATCGGCAGGCTTTTTTA    350

BSNT_02798___    348 TGAAATGAATGTCCTGTCAAAAGGCCACTTAATAGAAGCGGAGCGGGCTG    397
                     .|||||||||||.||.|||||||||||..|.||.||.||||||||.||.|
BL03237___spo    351 CGAAATGAATGTTCTCTCAAAAGGCCATCTGATCGAGGCGGAGCGCGCCG    400

BSNT_02798___    398 ACCTGGTCGGGGAGTATATCGGACATACCGCCCAAAAGACGAGAGATTTA    447
                     |.||.|||||.|||||.|||||.|||||.||.|||||.|||||.||||||
BL03237___spo    401 ATCTCGTCGGTGAGTACATCGGCCATACGGCGCAAAAAACGAGGGATTTA    450

BSNT_02798___    448 ATCAAAAAGTCATTAGGTGGCATTTTGTTTATAGACGAAGCCTACTCGCT    497
                     ||||||||..|..|.||.||.||..||||.||.||.||||||||.||.||
BL03237___spo    451 ATCAAAAAAGCGATGGGCGGAATCCTGTTCATCGATGAAGCCTATTCCCT    500

BSNT_02798___    498 GGCAAGAGGCGGCGAAAAGGACTTTGGGAAAGAAGCGATCGACACACTTG    547
                     .||.||||||||.||.||.|||||.||.||.||.||.|||||.|||.|.|
BL03237___spo    501 TGCCAGAGGCGGAGAGAAAGACTTCGGCAAGGAGGCAATCGATACATTGG    550

BSNT_02798___    548 TAAAGCATATGGAAGACAAACAGC-ATGAGTTTATTTTGATACTCGCCGG    596
                     |.||.||||||||.||.||.| || |.||.||.|||||.||.||||||||
BL03237___spo    551 TCAAACATATGGAGGATAAGC-GCAACGAATTCATTTTAATCCTCGCCGG    599

BSNT_02798___    597 ATATTCACGGGAAATGGATCATTTTCTCTCGTTAAATCCCGGACTCCAAT    646
                     ||||||.||||||||||||||||||||.||.|||||.||.||.||.||.|
BL03237___spo    600 ATATTCGCGGGAAATGGATCATTTTCTTTCATTAAACCCGGGCCTTCAGT    649

BSNT_02798___    647 CAAGATTTCCCATCTCCATTGATTTTCCGGATTACTCTGTGACCCAGCTC    696
                     ||||.|||||.|||..|||.||||||||.||||||||.||.|.||||||.
BL03237___spo    650 CAAGGTTTCCGATCAGCATCGATTTTCCCGATTACTCAGTCAGCCAGCTG    699

BSNT_02798___    697 ATGGAGATTGCGAAACGAATGATCGATGAAAGGGAATACCAGCTCAGTCA    746
                     |||||.|||||.|||||.|||||.|..|||||||||||.|||.||||.|.
BL03237___spo    700 ATGGACATTGCAAAACGGATGATGGCGGAAAGGGAATATCAGTTCAGCCC    749

BSNT_02798___    747 AGAAGCTGAATGGAAATTGAAAGATTACTTAATGACAGTGAAAAGCACGA    796
                     .||.|||||||||||..|||||||..|..|.|||.|.||.|||||.|||.
BL03237___spo    750 TGAGGCTGAATGGAAGCTGAAAGACCATCTGATGGCCGTCAAAAGTACGG    799

BSNT_02798___    797 CAAGTCCCATTAAATTCAGCAATGGACGTTTTGTCAGAAATGTGATCGAA    846
                     ..||.|||...||.|||||||||||.|||||.|||.|.||..||||||||
BL03237___spo    800 TCAGCCCCGCGAAGTTCAGCAATGGCCGTTTCGTCCGCAACCTGATCGAA    849

BSNT_02798___    847 AAATCGATCAGAGCACAAGCCATGAGGCTTTTAATGGGAGACCAATACTT    896
                     |||||.|||.|..|.||.||.|||||.||..|.|||||||||...|||||
BL03237___spo    850 AAATCCATCCGGTCGCAGGCGATGAGACTGCTGATGGGAGACTGCTACTT    899

BSNT_02798___    897 AAAAAGCGACTTGATGACCATCAAAAGCCAAGATCTTTCCATTAAAGAAG    946
                     |||.|..||||||||.||||||||||||||.|||||...|.|.||.||||
BL03237___spo    900 AAAGAATGACTTGATAACCATCAAAAGCCAGGATCTCGACTTGAAGGAAG    949

BSNT_02798___    947 AAGCATCTGGATCTGCA--TAG--    966
                     |.||       .|.|||  ||.  
BL03237___spo    950 ACGC-------GCCGCACGTATAA    966


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