Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01885 and BL03247

See Amino acid alignment / Visit BSNT_01885 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:24
# Commandline: needle
#    -asequence dna-align/BSNT_01885___argF.1.5803.seq
#    -bsequence dna-align/BL03247___argF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01885___argF-BL03247___argF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01885___argF-BL03247___argF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01885___argF
# 2: BL03247___argF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1010
# Identity:     683/1010 (67.6%)
# Similarity:   683/1010 (67.6%)
# Gaps:         109/1010 (10.8%)
# Score: 2221.0
# 
#
#=======================================

BSNT_01885___      1 -------ATGCACACA-----GTGAC---GCAAACCAGTTTATACGGAAA     35
                            .||.|.|||     |.|||   |.|.|.||.|.|.|..||.||
BL03247___arg      1 ATGTCTACTGTAAACATCGGGGCGACCCGGGAGATCAATCTGTCAGGCAA     50

BSNT_01885___     36 AGATTTATTAA-CGTTAAAGGACCTTAGTGAAGAGGATATAAACGCC---     81
                     .|||||.|||| |.|.||| |||.||....|||||||.||   ||.|   
BL03247___arg     51 GGATTTCTTAAGCCTGAAA-GACTTTTCAAAAGAGGAGAT---CGTCTAT     96

BSNT_01885___     82 TTGCTCGCAGAAGCCGGTGAGC-----TGAAACAAAACAAAATTC-AGCC    125
                     |||||...|||.||     |||     ||||.|.|||.||||||| ||.|
BL03247___arg     97 TTGCTGAAAGAGGC-----AGCGGCAATGAAGCGAAATAAAATTCAAGAC    141

BSNT_01885___    126 TATATTCCATGGCAAAACCTTGGCGATGATTTTTGAAAAATCATCAACGC    175
                      ||.||..|.||.|||||.|||||||||||.|||||||||||.||.|||.
BL03247___arg    142 -ATCTTTAAAGGAAAAACATTGGCGATGATCTTTGAAAAATCGTCGACGA    190

BSNT_01885___    176 GGACACGTGTTTCTTTTGAAGCGGGCATGGCACAGCTTGGCGGGAACGCC    225
                     |.||.||.||.||.||||||||.||.|||||.|||||.|||||.||||||
BL03247___arg    191 GAACGCGCGTATCGTTTGAAGCCGGAATGGCGCAGCTCGGCGGAAACGCC    240

BSNT_01885___    226 CTCTTTCTAAGCCAG-AAAGATCTGCAGCTGGGGCGCGGTGAGACTGTCG    274
                     ||.|||.|||| ||| |||||..||||||||||..|.||.||.||..|||
BL03247___arg    241 CTGTTTTTAAG-CAGTAAAGACATGCAGCTGGGCAGAGGGGAAACGATCG    289

BSNT_01885___    275 CTGATACGGCAAAAGTGCTGTCAGGCTATGTGGATGCCATCATGATCCGG    324
                     |.|||||.||.||||||||.||..|.||||||||.||.||.||||||||.
BL03247___arg    290 CAGATACCGCGAAAGTGCTTTCGCGATATGTGGACGCGATTATGATCCGC    339

BSNT_01885___    325 ACCTTTGAACATGAAAAGGTGGAGGAACTTGCCAAAGAAGCTGACATTCC    374
                     ||.||.|||||.|||||.||.||.||.||||||||..|.||.||.|||||
BL03247___arg    340 ACATTCGAACACGAAAAAGTCGAAGAGCTTGCCAAGCACGCCGAGATTCC    389

BSNT_01885___    375 GGTGATCAATGGACTTACTGATAAATACCACCCATGCCAGGCGCTGGCGG    424
                     .||||||||.|||.|.||.|||...|..||.||.||.||.|||||....|
BL03247___arg    390 CGTGATCAACGGATTGACCGATCTTTTTCATCCGTGTCAAGCGCTTAGTG    439

BSNT_01885___    425 ATCTCTTGACGATTAAGGAGATAAAAGGGAAGCTTAAA--GGCGTAAAAG    472
                     |.||.||.||||||.|.|||||.||| ||||..|||||  ||| |.||||
BL03247___arg    440 ACCTATTAACGATTCAAGAGATGAAA-GGAACATTAAAAGGGC-TGAAAG    487

BSNT_01885___    473 TCTCATACATCGGTGACGGAAATAACGTGGCGCACTCCTTGATGATCGGC    522
                     .|...||..|.||.||||||||.||.||.|||||.||..||.|.||||||
BL03247___arg    488 CCGTTTATGTTGGCGACGGAAACAATGTCGCGCATTCGCTGTTAATCGGC    537

BSNT_01885___    523 TGCGCGAAAATGGGCTGTGATATCTCGATCGCTTC-GCCAAAGGGATATG    571
                     |||||||||.||||.||.||.||..||.|.||||| .|||||||| ||||
BL03247___arg    538 TGCGCGAAAGTGGGATGCGACATTACGGTGGCTTCACCCAAAGGG-TATG    586

BSNT_01885___    572 AAGTGTTAGATGAAGCA------GCTGAAGC-GGCAAAAACATATGCACT    614
                            ||..|||.||      |.||||.| |||..|.||||..||   
BL03247___arg    587 -------AGCCGAATCAGGACGTGGTGAAACTGGCCGAGACATTCGC---    626

BSNT_01885___    615 TC----AATCCGGCTCTTCTATCACGCTGACAGATGATCCGATTGAAGCT    660
                      |    |||||||..|..|..|||||.|.|||.|||||||..|...|||.
BL03247___arg    627 -CGAAGAATCCGGTGCGGCCGTCACGATCACAAATGATCCCGTGTCAGCC    675

BSNT_01885___    661 GTAAAAGACGCGGACGTAATTTATTCTGATGTGTTTACAAGCATGGGGCA    710
                     ||..||.|.|||||.||.||.|||||||||||.||||||||||||||.||
BL03247___arg    676 GTTCAACAAGCGGATGTCATCTATTCTGATGTTTTTACAAGCATGGGACA    725

BSNT_01885___    711 GGAAGCGGAAGAGCAAGAACGTCTTGCTG----TCTTTGCGCCTTATCAG    756
                     |||.|.|||||...|||||||    |.||    |.|||||.|||||.||.
BL03247___arg    726 GGAGGAGGAAGCCGAAGAACG----GATGAAGATTTTTGCTCCTTACCAA    771

BSNT_01885___    757 GTGAATGCGG--CGCTTGTCAGCCATGCCAAGCCTGACTATACATTTTTA    804
                     ||.||  |||  ||||||||..|||||||||||||||.||.|..|||.|.
BL03247___arg    772 GTCAA--CGGAACGCTTGTCTCCCATGCCAAGCCTGATTACATCTTTCTG    819

BSNT_01885___    805 CATTGTCTCCCTGCGCATCGTGAGGAAGAAGTGACTGCGGAGATTATTGA    854
                     ||.||.||.|||||.||.||.||||||||.||.||.||.|||||.|||||
BL03247___arg    820 CACTGCCTTCCTGCCCACCGGGAGGAAGAGGTCACCGCAGAGATCATTGA    869

BSNT_01885___    855 CGGGCCGAACTCTGCAGTGTTCCAGCAGGCGGAAAACCGTCTTCATGTGC    904
                     |||.|||||.||.||.||.||.||||||||.||||||||.||.||.||.|
BL03247___arg    870 CGGTCCGAATTCAGCGGTATTTCAGCAGGCTGAAAACCGCCTGCACGTCC    919

BSNT_01885___    905 AAAAAGCACTGCTGAAGGCCATTTTATACAAAG----GGGAATCATCAAA    950
                     |||||||               |||||..||||    |    |.|||..|
BL03247___arg    920 AAAAAGC---------------TTTATTAAAAGCACTG----TTATCTTA    950

BSNT_01885___    951 AAACTGCTGA    960
                     |         
BL03247___arg    951 A---------    951


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