Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01869 and BL03254
See
Amino acid alignment /
Visit
BSNT_01869 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_01869___yitU.1.5803.seq
# -bsequence dna-align/BL03254___yitU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01869___yitU-BL03254___yitU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01869___yitU-BL03254___yitU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01869___yitU
# 2: BL03254___yitU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity: 605/836 (72.4%)
# Similarity: 605/836 (72.4%)
# Gaps: 46/836 ( 5.5%)
# Score: 2129.0
#
#
#=======================================
BSNT_01869___ 1 ATGGAGACAAAACCCTATTTAATCGCATTAGATTTAGATGGAACATTATT 50
||||||||||||||.||||||||.|||||.||.|||||.||.||||||||
BL03254___yit 1 ATGGAGACAAAACCATATTTAATTGCATTGGACTTAGACGGTACATTATT 50
BSNT_01869___ 51 AAAGGATGATAAAACCATATCTGAAAACACCCTTCAGACGATACAG---- 96
|||.||.||.||.|||||.||.|||| .||.||| ||| ||
BL03254___yit 51 AAAAGACGACAAGACCATCTCGGAAA----GCTCCAG-CGA---AGTCAT 92
BSNT_01869___ 97 -CGCCTAA--------AAGATGACGGGCATTATGTCTGCATCTCAACGGG 137
||| || ||||| ||.|||||.||.|||||.||.|||||
BL03254___yit 93 CCGC--AAGCTGCGGGAAGAT---GGACATTACGTGTGCATTTCTACGGG 137
BSNT_01869___ 138 GCGTCCGTACCGTTCAAGTTCCATGTACTACCAGCAGATGGAACT-GACA 186
..|.||||.|.|..||||.||||||||.||..|.|||.|..|.|| || .
BL03254___yit 138 AAGACCGTTCAGAGCAAGCTCCATGTATTATGATCAGCTCCAGCTCGA-T 186
BSNT_01869___ 187 ACGCCGATTGTCAATTTTAACGGAGCATTTGTCCATCATCCGCAGGACGA 236
||||||||.||||||||.|||||.||.|||||||||||.||..|.||.||
BL03254___yit 187 ACGCCGATCGTCAATTTCAACGGCGCGTTTGTCCATCACCCTAAAGATGA 236
BSNT_01869___ 237 CAGCTGGGGACGGTATCATACGTCACTCCCGCTTGATGTTGTCAAACAGC 286
.|||||||||||.|..|||||.||.||....||.||.||.|||||||||.
BL03254___yit 237 AAGCTGGGGACGCTTCCATACATCTCTTGATCTCGAGGTGGTCAAACAGA 286
BSNT_01869___ 287 TCGTGGATATCAGCGAGAGCTACAACGTACATAATGTGCTTGCTGAAGTG 336
||.|.||..|||||||.|..|||||||||||||||.|.|||||||||.|.
BL03254___yit 287 TCATTGAAGTCAGCGAAACGTACAACGTACATAATATCCTTGCTGAAATT 336
BSNT_01869___ 337 ATTGATGACGTATACTTTCATTACCATGATGAGCACCTGATTGATGCCTT 386
.|.|||||.||.||.||||||||.|||||.||..|.||||||||||.|||
BL03254___yit 337 GTCGATGATGTTTATTTTCATTATCATGACGAAAAGCTGATTGATGTCTT 386
BSNT_01869___ 387 TAACATGAACACAACAAATGTAACGGTCGGAGACTTGCGGGAAAATCTTG 436
||..|||..||...|.|||.|.||.||||||||.||..|...|||.||.|
BL03254___yit 387 TACGATGGGCAGCCCGAATATTACAGTCGGAGATTTAAGAACAAACCTCG 436
BSNT_01869___ 437 GTGAAGATGTGACGTCTGTACTCATACATGCAAAAGAAGAGGATGTGCCG 486
|..|.||||||||....|||.|.||.||.|||||||||||||||||.|||
BL03254___yit 437 GCCAGGATGTGACAAGCGTATTGATTCACGCAAAAGAAGAGGATGTTCCG 486
BSNT_01869___ 487 GCAATACGCTCATATTTATCGGATGTGCATGCCGAGGTAATCGACCATAG 536
||.||.|||||.|||.|.||.||.||.||.||.|||.|..||||||||||
BL03254___yit 487 GCGATCCGCTCCTATCTGTCAGACGTACACGCAGAGATGGTCGACCATAG 536
BSNT_01869___ 537 AAGATGGGCCGCACCGTGGCATGTCATTGAAATTATCAAAAGCGGCATGA 586
|||||||||.||.|||||||||||.||.|||.|.||.|||||||||||.|
BL03254___yit 537 AAGATGGGCGGCCCCGTGGCATGTAATCGAACTGATTAAAAGCGGCATCA 586
BSNT_01869___ 587 ATAAAGCGGTCGGCCTGCAGAAAATCAGCGATTATTACGGCCTGCCGAGG 636
||||||||||||||.|..|||||||||..||.||.|||||..|.|||...
BL03254___yit 587 ATAAAGCGGTCGGCTTAGAGAAAATCACGGACTACTACGGAATCCCGCCT 636
BSNT_01869___ 637 GAGCGGATCATTGCTTTCGGGGATGAGGATAACGATTTGGAAATGCTTGA 686
||||||.|||||||.|||||.|||||.||.|||||..|.|||||||||||
BL03254___yit 637 GAGCGGGTCATTGCCTTCGGCGATGAAGACAACGACCTTGAAATGCTTGA 686
BSNT_01869___ 687 ATTTGCAGGCTGCGGCGTTGCAATGGGAAATGGAATTGACGCGGT--CAA 734
.||.|||||||||||.||.||.|||||.||.||.||.||.|.||| .||
BL03254___yit 687 GTTCGCAGGCTGCGGAGTAGCGATGGGCAACGGCATCGAAGGGGTAAAAA 736
BSNT_01869___ 735 GCAGATTGCCAAC-------CGAACAACGGCTACAAATGAAGAGGACGGC 777
|| .||||.||| |||| |.|| |||||.||.|||||.
BL03254___yit 737 GC--GTTGCAAACAAGGTCACGAA-ATCG------AATGAGGAAGACGGA 777
BSNT_01869___ 778 GTTGCAAGGTTTTTGAAAGAATATTTCTCACTTTAA 813
.|.|||...|||||.||.||.||.|||.|..|.|||
BL03254___yit 778 ATCGCAGTCTTTTTAAAGGATTACTTCGCTTTATAA 813
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.