Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01897 and BL03257

See Amino acid alignment / Visit BSNT_01897 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_01897___yjzB.1.5803.seq
#    -bsequence dna-align/BL03257___yjzB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01897___yjzB-BL03257___yjzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01897___yjzB-BL03257___yjzB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01897___yjzB
# 2: BL03257___yjzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 281
# Identity:     143/281 (50.9%)
# Similarity:   143/281 (50.9%)
# Gaps:          97/281 (34.5%)
# Score: 353.5
# 
#
#=======================================

BSNT_01897___      1 TTGGATGTG-------------TTTT--CAAGAATGATGTTCGGC---GA     32
                           |||             ||||  |||.|||||||||.|||   .|
BL03257___yjz      1 ------GTGGCGAACGACGATTTTTTCACAAAAATGATGTTTGGCTCAAA     44

BSNT_01897___     33 TGCA--------GCAAAACCAACAGAAGAGAAGGA---GGAACAGCAAGA     71
                     ||||        |||        .|||||||.|||   |||...|.|||.
BL03257___yjz     45 TGCACCCGCCAGGCA--------TGAAGAGACGGAGACGGATGCGGAAGC     86

BSNT_01897___     72 GGAGGTTTCTCAGACAAACGACGAAAAGACGATTA---------------    106
                     |||            ||.||.||  ||||||.|.|               
BL03257___yjz     87 GGA------------AACCGCCG--AAGACGCTGAAGTATCCCAAGAAGC    122

BSNT_01897___    107 --ATTACATGCATATTATGGACCAAATC-GGTT----CAATTATGAACTC    149
                       ||||.|||||..|..||     |||| ||||    .|||||||.|.||
BL03257___yjz    123 CGATTATATGCACGTGTTG-----AATCAGGTTGGAGAAATTATGGATTC    167

BSNT_01897___    150 TCTTGATCAAATCAAGCCCG-CTTTAAAGGA----GCTTGCACCCATGCT    194
                     .||.|||.|..|.|||||.| .|||||||.|    |||     |.|||.|
BL03257___yjz    168 GCTCGATGAGCTGAAGCCTGTGTTTAAAGAAATCGGCT-----CAATGGT    212

BSNT_01897___    195 CTCCGCTATTAAAAAGAAAAT---CATGTGA    222
                     |..||||.|.|||||.||.||   |||.|.|
BL03257___yjz    213 CAGCGCTTTGAAAAATAAGATTTCCATATAA    243


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