Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00180 and BL03262
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_00180___radA.1.5803.seq
# -bsequence dna-align/BL03262___radA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00180___radA-BL03262___radA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00180___radA-BL03262___radA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00180___radA
# 2: BL03262___radA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1398
# Identity: 1074/1398 (76.8%)
# Similarity: 1074/1398 (76.8%)
# Gaps: 39/1398 ( 2.8%)
# Score: 4088.5
#
#
#=======================================
BSNT_00180___ 1 ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTC 50
||||||||||||||..|.||||||||.||.||.||.|||||||||||.||
BL03262___rad 1 ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATC 50
BSNT_00180___ 51 TCCAAAATGGATGGGGAAATGTCCGGGCTGCGGTGCTTGGAATACAATGG 100
..|.||.||||||||||||||.||.||.||||||||.||||||||.||||
BL03262___rad 51 CGCCAAGTGGATGGGGAAATGCCCCGGATGCGGTGCATGGAATACCATGG 100
BSNT_00180___ 101 TGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCT 150
|||||||||.|||.||||||.|..|.|||||..|.|||.|.||||||||.
BL03262___rad 101 TGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCA 150
BSNT_00180___ 151 CATTCTGTTCAAACTGTACAGAAACCTTCACCTATTACATCAATCGAAAC 200
|||||.||||||||.||.||.||.|||||||||.|.||.|||||.|||||
BL03262___rad 151 CATTCCGTTCAAACGGTGCAAAAGCCTTCACCTCTCACTTCAATTGAAAC 200
BSNT_00180___ 201 ATCAGAAGAACCCCGCGTCAAAACCCAGCTTGGCGAGTTTAACAGAGTAC 250
|.|||||||.||.||..|.|||||..|.||||||||.||.|||.|.|| |
BL03262___rad 201 AACAGAAGAGCCGCGAATTAAAACGAAACTTGGCGAATTCAACCGCGT-C 249
BSNT_00180___ 251 TCGGCGGA---GGTGTCGTTAAAGGCTCCCTCGTTTTAATTGGCGGTGAT 297
|.| ||| ||..||||.|||||.||.||.||||||||.||.||.||.
BL03262___rad 250 TTG--GGAAACGGCATCGTCAAAGGTTCACTTGTTTTAATCGGAGGCGAC 297
BSNT_00180___ 298 CCTGGTATCGGAAAGTCAACGCTATTACTGCAGGTTTCCGCTCAATTATC 347
||.||.|||||.||.||||| .||.|||| .||||.||||
BL03262___rad 298 CCCGGCATCGGGAAATCAAC---CTTGCTGC---------TTCAAGTATC 335
BSNT_00180___ 348 AG----GCTC-----ATCAAACAG----TGTCCTGTATATTTCGGGAGAA 384
.| |||| .||||| || |||||||||.||.||.||.|||
BL03262___rad 336 TGCCCAGCTCGCTGATTCAAA-AGAAAATGTCCTGTACATCTCAGGCGAA 384
BSNT_00180___ 385 GAATCTGTAAAGCAAACGAAGCTGCGAGCAGACCGTCTGGGCATTAATAA 434
|||||.||.|||||.||.||||||.|||||||||||||.||.||.||.|.
BL03262___rad 385 GAATCGGTCAAGCAGACAAAGCTGAGAGCAGACCGTCTAGGTATCAACAG 434
BSNT_00180___ 435 TCCGTCACTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCGTCTG 484
|||..|.||.||.||||||||||||||||||||||||||||||.|||||.
BL03262___rad 435 TCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACGTCTT 484
BSNT_00180___ 485 CTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACG 534
|||||.||||||||||.|||.|.||.||.||.|||||.||.||||||||.
BL03262___rad 485 CTATAGAAGAGATGAACCCATCATTCGTAGTGGTTGATTCGATTCAAACC 534
BSNT_00180___ 535 GTTTACCAAAGCGATATTACATCGGCTCCAGGCAGTGTGTCACAGGTCAG 584
|||||||||||.|||||.|||||.|||||.|||||.||.||.||||||||
BL03262___rad 535 GTTTACCAAAGTGATATCACATCCGCTCCGGGCAGCGTCTCCCAGGTCAG 584
BSNT_00180___ 585 AGAATGTACTGCTGAGCTGATGAAAATCGCAAAAACAAAAGGTATTCCGA 634
.|||||.||.|||||||||||||.|||.||||||||.|||||.|||||.|
BL03262___rad 585 GGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCAA 634
BSNT_00180___ 635 TTTTTATCGTAGGGCACGTGACGAAAGAAGGGTCTATTGCAGGTCCGAGA 684
|.||||||||.|||||.||.||.||||||||.||.|||||.||.||||||
BL03262___rad 635 TATTTATCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGA 684
BSNT_00180___ 685 CTGTTGGAGCATATGGTTGACACTGTTTTATATTTTGAAGGAGAACGCCA 734
||..||||.||||||||.|||||.||..|.||.||||||||.||.||.||
BL03262___rad 685 CTTCTGGAACATATGGTCGACACCGTCCTTTACTTTGAAGGTGAGCGGCA 734
BSNT_00180___ 735 CCATACTTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACAA 784
.|||||.||.||.|||||..|.||.||.||||||||.||.|||||.||.|
BL03262___rad 735 TCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGA 784
BSNT_00180___ 785 ACGAAATGGGCATTTTCGAAATGCGGGAAGAGGGGCTCACTGAGGTTTTG 834
|.||||||||.||.||.||||||.||||||||||.||.||.|||||..||
BL03262___rad 785 ATGAAATGGGAATCTTTGAAATGAGGGAAGAGGGCCTGACAGAGGTGCTG 834
BSNT_00180___ 835 AATCCTTCGGAAAT-TTTCTTAGAAGAACGCTCTGCTGGTTCCGCAGGCT 883
|||||.||.||||| |||| |.|||||.|||||.||.||..|.||.||.|
BL03262___rad 835 AATCCGTCAGAAATCTTTC-TCGAAGAGCGCTCGGCGGGAGCGGCCGGAT 883
BSNT_00180___ 884 CGAGTATCACTGCCTCTATGGAGGGCACTAGACCGATTC-TCGTTGAAAT 932
|||||.||...|||||.|||||.|||||.||.|| |.|| |.||.||.||
BL03262___rad 884 CGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCC-AGTCTTAGTAGAGAT 932
BSNT_00180___ 933 TCAGGCGCTCATCTCGCCAACAAGCTTTGGCAACCCAAGGCGTATGGCAA 982
|||||||||.||.||.||.||.||||||||.||.||..|.||.|||||||
BL03262___rad 933 TCAGGCGCTGATTTCCCCCACGAGCTTTGGGAATCCGCGCCGGATGGCAA 982
BSNT_00180___ 983 CGGGAATAGACCATAACAGGGTTTCTCTGTTAATGGCTGTGTTAGAAAAA 1032
|.||.||.||.||||||.|.||.||..||.|||||||.||.|||||||||
BL03262___rad 983 CCGGGATTGATCATAACCGCGTCTCATTGCTAATGGCAGTTTTAGAAAAA 1032
BSNT_00180___ 1033 AGAGTTGGACTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGG 1082
||.|||||||||||||||||||||||.||.||.|||||.|||||.||.||
BL03262___rad 1033 AGGGTTGGACTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGG 1082
BSNT_00180___ 1083 CGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCGATTGTGATTAGTA 1132
.|||||.|||||.||.||.||.||.|||||.||.||..|||...|.||.|
BL03262___rad 1083 AGGCGTCAAGCTGGACGAGCCAGCGATTGACCTCGCCGTTGCAGTGAGCA 1132
BSNT_00180___ 1133 TCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATT 1182
||||.||||||||.||||||||.||.||..||||..|.|||||||||||.
BL03262___rad 1133 TCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATC 1182
BSNT_00180___ 1183 GGAGAAGTGGGATTAACCGGAGAAGTCCGGCGGGTTTCAAGAATTGAACA 1232
||||||||.|||||.||.||.||.|||||..|.||.|||||.||.|||||
BL03262___rad 1183 GGAGAAGTCGGATTGACAGGGGAGGTCCGCAGAGTATCAAGGATAGAACA 1232
BSNT_00180___ 1233 GCGTGTGAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACCCG 1282
|.|.|||.|.||||||||.||||||||.||||||.|.|||||.||.||..
BL03262___rad 1233 GAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCCTT 1282
BSNT_00180___ 1283 CGGCAAATCTGGACGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGA 1332
|.||||||.|.||.|||||||||||.||.|||||.||.||.||..||||.
BL03262___rad 1283 CTGCAAATGTAGAAGGATGGACAAAGCCGAAAGGAATCGAAGTCGTCGGC 1332
BSNT_00180___ 1333 GTAGCAAATGTTGCAGAAGCGCTTCGTACTTCATTAGGAGGATAA--- 1377
||.|.||||||.||.||.||.|||||..|||||||||||||||.|
BL03262___rad 1333 GTTGAAAATGTAGCTGAGGCCCTTCGAGCTTCATTAGGAGGATCATAA 1380
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