Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00194 and BL03270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00194___yazC.1.5803.seq
# -bsequence dna-align/BL03270___yazC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00194___yazC-BL03270___yazC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00194___yazC-BL03270___yazC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00194___yazC
# 2: BL03270___yazC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity: 302/439 (68.8%)
# Similarity: 302/439 (68.8%)
# Gaps: 29/439 ( 6.6%)
# Score: 977.0
#
#
#=======================================
BSNT_00194___ 1 ATGCTTGAATTT-GATACGATAAAAGATTCTAAGCAGCTTAACGGTCTTG 49
.||||||| ||.||.||.|||||..|.||.|||||.||.|||.|.|
BL03270___yaz 1 ----ATGAATTTGGAAACCATTAAAGACGCCAAACAGCTGAATGGTTTGG 46
BSNT_00194___ 50 CGCTTGCTTATATAGGTGATGCCATTTTTGAAGTGTATGTCAGGCATCAC 99
||||||||||.||.|||||||||.||||.||.||.|||||.|||||||||
BL03270___yaz 47 CGCTTGCTTACATGGGTGATGCCGTTTTGGAGGTATATGTGAGGCATCAC 96
BSNT_00194___ 100 CTGCTT-AAGCAGGGCTTTACCAAACCAAATGATCTTCATAAGAAATCAA 148
|| ||| |||||.|||.|.||.|..||.||||||||.||...|.|.||.|
BL03270___yaz 97 CT-CTTAAAGCAAGGCATGACAAGGCCCAATGATCTGCACCGGCAGTCGA 145
BSNT_00194___ 149 GCCGGAT-TGTTTCAGCAAAGTCACAGGCTGAG-ATCCTATTTTTTCTGC 196
|.| ||| |||.||.||.|||||.||||| .|| ||.||.|||...||..
BL03270___yaz 146 GGC-GATATGTCTCCGCCAAGTCGCAGGC-AAGCATGCTGTTTGCGCTTG 193
BSNT_00194___ 197 AGAATCAATCATTTTTTACGGAAGAAGAGGAAGCGGTGCTGAAAAGAGGC 246
||.|.||...||||||.||.||.|||||..|.||.|||||||.||||||.
BL03270___yaz 194 AGGAGCAGGAATTTTTCACCGAGGAAGAACAGGCTGTGCTGAGAAGAGGG 243
BSNT_00194___ 247 AGAAATGCCAAGTCAGGGACAACACCTAAAAATACAGATGTTCAGACGTA 296
.|.||||||||.||.||.||...|||.|||||.||.|||||.||.||.||
BL03270___yaz 244 CGGAATGCCAAATCCGGAACGGTACCGAAAAACACGGATGTCCAAACATA 293
BSNT_00194___ 297 CCGCTACAGTACAGCATTTGAAGCGCTTCTGGGCTACCTTTTTCTAGAGA 346
.||.||||||||.||.|||||.|||.|..|.||.||.||||||||.||||
BL03270___yaz 294 TCGTTACAGTACGGCTTTTGAGGCGGTCATCGGGTATCTTTTTCTTGAGA 343
BSNT_00194___ 347 AAAAAGAGGAACGACTTAGTCAGCTCGT---AGCCGAAGCTATACAATTC 393
|.|..||.||..|.||||.|.|.|||.| |||.| .|||..| ||..|
BL03270___yaz 344 ACAGGGAAGATAGGCTTAATGAACTCATCAAAGCAG-CGCTGGA-AAAAC 391
BSNT_00194___ 394 GGGACGTCAGGGAGGAAAACAAATGAGTCAGCAACATGA 432
||||.|.||||||||||...||||||
BL03270___yaz 392 GGGATGGCAGGGAGGAAGTAAAATGA------------- 417
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