Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00195 and BL03271

See Amino acid alignment / Visit BSNT_00195 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00195___yacO.1.5803.seq
#    -bsequence dna-align/BL03271___yacO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00195___yacO-BL03271___yacO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00195___yacO-BL03271___yacO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00195___yacO
# 2: BL03271___yacO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity:     586/760 (77.1%)
# Similarity:   586/760 (77.1%)
# Gaps:          20/760 ( 2.6%)
# Score: 2228.0
# 
#
#=======================================

BSNT_00195___      1 ATGAGTCAGCAACATGATTACGTCATAGGGAAAAATGCAGTGATCGAGAC     50
                     |||||||||||.|||||||||||||||||.|||||.||.||.|||||.||
BL03271___yac      1 ATGAGTCAGCAGCATGATTACGTCATAGGAAAAAACGCGGTCATCGAAAC     50

BSNT_00195___     51 GTTAAAATCTGATCGGAAGCTGTATAAGCTGTGGATGGCGGAAAACACCG    100
                     .|||||.||.|..|||.|..||||||||||||||||||||||||||||.|
BL03271___yac     51 ATTAAAGTCCGGCCGGGAATTGTATAAGCTGTGGATGGCGGAAAACACAG    100

BSNT_00195___    101 TAAAGGGACAAGCACAGCAAGTGATTGAGCT---TGCCAAAAAGCAGGGA    147
                     |.||||||||.||.||||||||..|.||.||   .|||||||   |.||.
BL03271___yac    101 TGAAGGGACAGGCTCAGCAAGTCGTCGATCTCGCCGCCAAAA---ATGGC    147

BSNT_00195___    148 ATCACGATTCAATACGTCCCGAGAAAAAAACTCGATCAAATGGTGACAGG    197
                     .||||||||||.||.|||||.|||||||||||||||||||||||..|.||
BL03271___yac    148 GTCACGATTCATTATGTCCCAAGAAAAAAACTCGATCAAATGGTTTCCGG    197

BSNT_00195___    198 ACAGCATCAGGGCGTAGTGGCACAGGTTGCAGCGTATGAATATGCAGAAC    247
                     |||||||||.|||||.||.||.|||||.||.||.||.||.|||||.||.|
BL03271___yac    198 ACAGCATCAAGGCGTCGTCGCCCAGGTAGCGGCTTACGAGTATGCCGAGC    247

BSNT_00195___    248 TGGACGA--TTTATATAAAGCAGCCGAAGAAAAAAATGAACAGCCTTTCT    295
                     ||||.||  |||.|..||||  ||||||||.|.||||||||||||.||..
BL03271___yac    248 TGGATGATCTTTTTCAAAAG--GCCGAAGACAGAAATGAACAGCCGTTTA    295

BSNT_00195___    296 TCCTCATTCTGGACGAGCTTGAAGACCCTCATAACCTTGGTTCCATTATG    345
                     ||||..|..|.|||||..||||.||.||.||.|||||.||.||.||||||
BL03271___yac    296 TCCTTGTATTAGACGAAATTGAGGATCCGCACAACCTGGGCTCTATTATG    345

BSNT_00195___    346 AGGACAGCAGATGCGGTCGGCGCTCATGGCATCGTCATTCCAAAACGGAG    395
                     .|.||.|||||.||||||||.|||||.||||||||||||||.|||.||.|
BL03271___yac    346 CGCACCGCAGACGCGGTCGGGGCTCACGGCATCGTCATTCCGAAAAGGCG    395

BSNT_00195___    396 AGCTGTCGGGCTGACAACAACAGTGGCAAAAGCTTCAACAGGAGCAATTG    445
                     .||.|||||.||.|||||.||.||.||.|||||.||.||||||||.||.|
BL03271___yac    396 CGCGGTCGGCCTTACAACGACTGTCGCCAAAGCCTCGACAGGAGCCATCG    445

BSNT_00195___    446 AGCACATTCCTGTAG-CAAGAGTCACCAATTTGGCACGGACGTTAGAAGA    494
                     |.||.|||||.||.| |||| ||.||||||.||.|.|||||..|.|||||
BL03271___yac    446 AACATATTCCGGTCGTCAAG-GTGACCAATCTGTCGCGGACCCTGGAAGA    494

BSNT_00195___    495 GATGAAAGAGCGGGGAATCTGGGTTGTCGGAACGGATGCGTCCGCGCGTG    544
                     .|||||.|..|||||.||.|||||.|||||.||.||||||||.|..|...
BL03271___yac    495 AATGAAGGGACGGGGCATTTGGGTCGTCGGTACCGATGCGTCTGGACAAC    544

BSNT_00195___    545 AGGATTAC----CGTAATATGGACGGCAATATGCCTTTGGCTCTAGTCAT    590
                     ||||.|||    ||    .|||||||.||||||||..|.||.||.|||||
BL03271___yac    545 AGGACTACAGGTCG----CTGGACGGAAATATGCCGCTTGCGCTTGTCAT    590

BSNT_00195___    591 CGGAAGTGAAGGAAAAGGGATGGGCCGCCTTGTGAAGGAAAAGTGCGATT    640
                     |||.||.|||||||||||.|||||..|.|||||.||.||.||.||.||||
BL03271___yac    591 CGGCAGCGAAGGAAAAGGCATGGGAAGGCTTGTTAAAGAGAAATGTGATT    640

BSNT_00195___    641 TTCTCATTAAACTCCCGATGGCCGGAAAGGTAACTTCACTAAATGCATCT    690
                     ||||||||...||.||||||||.||||||||.||.||.||.||.||.||.
BL03271___yac    641 TTCTCATTCGCCTGCCGATGGCGGGAAAGGTCACATCCCTGAACGCCTCA    690

BSNT_00195___    691 GTCGCGGCTGGTCTTTTGATGTATGAAGTCTACCGGAAACGAAACCCTGT    740
                     ||.||.||.||.||..|||||||||||||.|||||||||||||.||||.|
BL03271___yac    691 GTTGCAGCCGGCCTGCTGATGTATGAAGTGTACCGGAAACGAAGCCCTCT    740

BSNT_00195___    741 GGGAGAATAA    750
                     |||||||||.
BL03271___yac    741 GGGAGAATAG    750


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.