Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02952 and BL03276

See Amino acid alignment / Visit BSNT_02952 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_02952___yndL.1.5803.seq
#    -bsequence dna-align/BL03276.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02952___yndL-BL03276.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02952___yndL-BL03276.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02952___yndL
# 2: BL03276
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 909
# Identity:     525/909 (57.8%)
# Similarity:   525/909 (57.8%)
# Gaps:         225/909 (24.8%)
# Score: 1443.0
# 
#
#=======================================

BSNT_02952___      1 ATGAAACCGGCCAAAGTATCCCTGCTCCGCCGTTTGCTCCATTCCTTGAA     50
                     |||||||||||||||||||||||.||||.|||.||||||||.|.|.||||
BL03276            1 ATGAAACCGGCCAAAGTATCCCTACTCCACCGATTGCTCCAGTGCCTGAA     50

BSNT_02952___     51 GCA---TGTTGATTGTAACATAGCCAAACGTTTTCCATCAACTATTAAAA     97
                     |||   ||||||||||||||.||..||.||||||.||.|||         
BL03276           51 GCAATGTGTTGATTGTAACACAGTAAATCGTTTTACAGCAA---------     91

BSNT_02952___     98 TTGTAAA-ATTATTGTTTAT-TTTTATGGTATTT--ACTCCGATTTCTT-    142
                        |||| |||.||||..|| ||||||.| ||||  .||..|||.||.| 
BL03276           92 ---TAAACATTTTTGTGAATATTTTATTG-ATTTCGGCTGTGATCTCATT    137

BSNT_02952___    143 --CAATTTATGCTG-------------AA-----------GAT--ATATA    164
                       ||..||.|||||             ||           |||  |||| 
BL03276          138 CCCATATTCTGCTGCGGCCCATGGCGCAACACAGTCCGGCGATCAATAT-    186

BSNT_02952___    165 TCAGAATTTTGAGGAATTAAAAAACAATGAAGATC---CTTCT-----GA    206
                     ||| |..|||||.|||||..|....||||||||||   |||||     .|
BL03276          187 TCA-AGCTTTGAAGAATTGGAGCGGAATGAAGATCCAGCTTCTTACCGAA    235

BSNT_02952___    207 TTACGGTGTTGTTACGAAAGAAACCGGAA----GCC----CTGTTCTTGT    248
                     ||||||.|         |||||  ||.||    |||    ||..||.|| 
BL03276          236 TTACGGAG---------AAGAA--CGCAAGAGTGCCGATGCTCATCATG-    273

BSNT_02952___    249 TTTAGCTATTCACGGAGGAGGTATTGAAGGTGGGACAAGTGAAGTAGCCA    298
                         ||.||.||.|||||.||.||.|||...||.||.||.|||.|.||||
BL03276          274 ----GCCATCCATGGAGGCGGCATCGAACCCGGAACGAGCGAAATCGCCA    319

BSNT_02952___    299 GAGAGCTCAG----CAAAGAGTACTCGATGTATTTATTTGAAGGCTTAAA    344
                     ..||    ||    ||||.|.||.||..||||.||.||||||||..|.||
BL03276          320 ATGA----AGTGTCCAAAAACTATTCCCTGTACTTGTTTGAAGGGCTGAA    365

BSNT_02952___    345 ATCTGCAGGAAACTCAGTCCTGCACATTACGAGCACGCACTTTGATGAAC    394
                     |||..||||.||..|.|.|||.||||||||.|||||||..|||||.||.|
BL03276          366 ATCATCAGGCAATACGGACCTTCACATTACAAGCACGCGTTTTGACGAGC    415

BSNT_02952___    395 CTCGGGCCCTTAAAATGACGGGAAATCATGAATATGTCATTTCATTACAC    444
                     |...|||.||...|||.||.|.||..||..|.||||||||.||..|.|||
BL03276          416 CAGCGGCGCTCGCAATTACTGCAAGCCACCAGTATGTCATGTCGCTCCAC    465

BSNT_02952___    445 GGGTA-CGCAGAAGAAGATCAGC-AGATCGAAGTCGGCGGTACAGATCGC    492
                     ||.|| ..||| .||||| |.|| |.||..||||.|||||.|||||.|||
BL03276          466 GGCTATTACAG-TGAAGA-CCGCGATATTAAAGTAGGCGGCACAGACCGC    513

BSNT_02952___    493 G-TAAGAGCGGCAGATTTAGTTGAGAAATTGCAGCATG--CC------GG    533
                     | |||.|.|.|.|.| ||.|||||     || ||| ||  ||      ||
BL03276          514 GCTAAAATCAGAATA-TTGGTTGA-----TG-AGC-TGAACCGCTCGGGG    555

BSNT_02952___    534 TTTTCCTGCTGTATTGCT------------CAA-TA---CGGACCATCCA    567
                     |||.|| ||||.|.||||            ||| ||   ||||  |.|||
BL03276          556 TTTGCC-GCTGAAATGCTGGGGACAGATGACAAGTATGCCGGA--ACCCA    602

BSNT_02952___    568 CATGCGGGCGTTAGTCCGAATAACATTGCAAATAAATCAAAAACAGGTT-    616
                                   ||||||||||||.||.||.||.||       |.|| 
BL03276          603 --------------TCCGAATAACATCGCCAACAAGTC-------GCTTT    631

BSNT_02952___    617 ------TAAGTATCCAGATAGAAATGAGCACAGGCTTTCGAAAGTCTTTG    660
                           |.||.||.|||.|.|||||||||||.||.||.||.||.|||||.
BL03276          632 CCGGGCTGAGCATTCAGCTTGAAATGAGCACGGGTTTCCGCAAATCTTTA    681

BSNT_02952___    661 TTCGGCATCTTTTCTTTAAAAAGCAGAGCTGTTACTCAAAATGAGAGGTT    710
                     ||||.|...|||.|..|||||..|||.||.|..||.|||||.||.|.|||
BL03276          682 TTCGACCGGTTTACACTAAAAGACAGGGCGGCGACGCAAAACGAAACGTT    731

BSNT_02952___    711 TTATAAGTTTACAGAAG-TGATG------TTCCGTTTTC-TCAAA--TAT    750
                     |||....|||||| ||| ||.||      ||   |.||| |.|||  |||
BL03276          732 TTACCGATTTACA-AAGCTGCTGACAGATTT---TATTCATGAAAACTAT    777

BSNT_02952___    751 -----AGCTACTGA------------------------------------    759
                          ||  ||.||                                    
BL03276          778 GAAGAAG--ACGGAGGGGATTTCCCCTCTGCAAAAATAAAACACCCCCTT    825

BSNT_02952___    759 ---------    759
                              
BL03276          826 CAAGTGTGA    834


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