Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04460 and BL03286

See Amino acid alignment / Visit BSNT_04460 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04460___ytkC.1.5803.seq
#    -bsequence dna-align/BL03286___ytkC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04460___ytkC-BL03286___ytkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04460___ytkC-BL03286___ytkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04460___ytkC
# 2: BL03286___ytkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 421
# Identity:     279/421 (66.3%)
# Similarity:   279/421 (66.3%)
# Gaps:          32/421 ( 7.6%)
# Score: 787.0
# 
#
#=======================================

BSNT_04460___      1 ATGGATAGAGACTTTGGCATCTTTTCG-TTTTTAGCAGTCAGCGTTTCAG     49
                     |||..||..|||||..||||||||||| |.|||| ||.|..|..|.||.|
BL03286___ytk      1 ATGTTTAAGGACTTAAGCATCTTTTCGCTCTTTA-CAATTGGTTTATCGG     49

BSNT_04460___     50 -CAGCGGGTTTTTTCTTTGGAGGTTTTCAGTATTCATTTCTGATTTTGCT     98
                      ||.| ||.|||||.|||||..|..|..|.||||.||||.||||.||..|
BL03286___ytk     50 CCATC-GGATTTTTGTTTGGCCGAATCGAATATTTATTTATGATCTTAAT     98

BSNT_04460___     99 CTCTCTTATGGCAATTGAATTTATCAGTACGACTTTGAAGGAA-------    141
                     ..|.||.||||..|||||||||.||||.|..|..|||||.|||       
BL03286___ytk     99 TACGCTGATGGGCATTGAATTTGTCAGCAAAAGCTTGAACGAATGTGTGG    148

BSNT_04460___    142 ACCAT-TATTCACAAACTGTCATTTAAAAAGGTATTTGCCCGGCTTGTCA    190
                     |..|| .|||.||||        ||||.|.|.|.|||.|..||||.|..|
BL03286___ytk    149 AAGATCGATTTACAA--------TTAAGAGGCTGTTTACAAGGCTGGCGA    190

BSNT_04460___    191 AAAAATTAGTCACGCTGGCTCTGATCTCTGTATG-CCACTTTTTTGATCA    239
                     |||||||.||.|||||...||||||.||.|| || ||||.||||||||||
BL03286___ytk    191 AAAAATTGGTTACGCTCTTTCTGATATCCGT-TGCCCACCTTTTTGATCA    239

BSNT_04460___    240 GCTGCTG-AATACACAGG--GATCAATTCGTGACTTGGCTATTATGTTTT    286
                     ..||||| ||   |||||  |.||.||.||.||.||..||||||||||||
BL03286___ytk    240 AATGCTGCAA---ACAGGCAGTTCGATCCGCGATTTTTCTATTATGTTTT    286

BSNT_04460___    287 ATATTCTTTATGAATCTGTGCAAATTGTTGTG-ACAGC-CAGTTCTCTTG    334
                     |||||.|.||||||.|..|.|||||.| ||.| ||.|| || |||..|.|
BL03286___ytk    287 ATATTTTATATGAAGCGTTTCAAATCG-TGAGCACGGCTCA-TTCGTTAG    334

BSNT_04460___    335 GCATACCGGTTCCTCAGATGCTTGTCGATCTTTTAGAAACGTTAAAAAAT    384
                     |.||.||.||.||.||||||.|..|.||..|||||.|.||..||||..|.
BL03286___ytk    335 GAATCCCCGTGCCGCAGATGTTATTGGACATTTTAAATACCATAAAGGAA    384

BSNT_04460___    385 AAATTTAAGCGCAAACCGTAA    405
                     |||.|...|.|.||.||||||
BL03286___ytk    385 AAACTCCGGGGAAAGCCGTAA    405


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.