Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03249 and BL03308
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03249___yplQ.1.5803.seq
# -bsequence dna-align/BL03308___yplQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03249___yplQ-BL03308___yplQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03249___yplQ-BL03308___yplQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03249___yplQ
# 2: BL03308___yplQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 468/660 (70.9%)
# Similarity: 468/660 (70.9%)
# Gaps: 36/660 ( 5.5%)
# Score: 1536.5
#
#
#=======================================
BSNT_03249___ 1 TTGTTTACAATCAAAGAAGAGATCGCCAATGCGATTACACACGGCATCGG 50
.|||..||.||.||||||||.||.||.|||||.||.||.||.||..||||
BL03308___ypl 1 ATGTACACGATTAAAGAAGAAATTGCTAATGCAATAACCCATGGACTCGG 50
BSNT_03249___ 51 TGTCCTCTTATCCATCCCAGCATTAGTGTTTCTAATCATATTTGCGGCTA 100
.||||||.|.||.||.||.||..|.||.|||.|..|.|||||||||
BL03308___ypl 51 CGTCCTCCTGTCAATACCTGCCATCGTATTTTTGGTGATATTTGCG---- 96
BSNT_03249___ 101 AT----TACGG--GTC----TGCATGGGACATTATCAGCTTTACAATATT 140
|| ||||| ||| || ||| ||.||||||||.||||.||
BL03308___ypl 97 ATCCGCTACGGAAGTCCGGTTG-ATG-----TTGTCAGCTTTTCAATTTT 140
BSNT_03249___ 141 CGGTGTCTCTATGCTGCTGTTATATTTGAGCTCCACCCTGCTTCACAGCA 190
|||.|..||.||||||.|..|.|||||.||.||.|||||.||.|||||||
BL03308___ypl 141 CGGCGCTTCCATGCTGTTCCTGTATTTAAGTTCGACCCTTCTGCACAGCA 190
BSNT_03249___ 191 -TCA-CACATAAAAAAACGAAGGACATTTTGGAGATTATTGATCATAGCG 238
||| ||| .|||||||.||.||.|||.|||||||.||.|||||....|
BL03308___ypl 191 TTCAGCAC--CAAAAAACAAAAGATATTCTGGAGATCATCGATCACTCAG 238
BSNT_03249___ 239 CGATTTACGTACTCATCGCCGGAACCTACACGCCTTTTTTGCTTGGGCCG 288
|.||.||||||||.||.||.||.||.|||||.||..|..|.||.||.||.
BL03308___ypl 239 CCATCTACGTACTGATTGCAGGGACATACACACCGCTGCTCCTCGGACCT 288
BSNT_03249___ 289 CTGAAAGGCACACTCGGCTTTACCCTGTTGGTTATCGTATGGTCACTTGC 338
.||||||||.|.||.||||.|||..||.|.|.|.||||.|||...|||||
BL03308___ypl 289 TTGAAAGGCGCGCTAGGCTATACGATGCTTGCTGTCGTTTGGGGGCTTGC 338
BSNT_03249___ 339 CCTAGGCGGAATCGTTTTTAAAATTTTCTTTGTGAAACGGTTTATCCTAT 388
..|.|||||..|.||.||||||||.||.|||||||||||||||||| .|
BL03308___ypl 339 GATTGGCGGGGTTGTGTTTAAAATCTTTTTTGTGAAACGGTTTATC--GT 386
BSNT_03249___ 389 TGTCA--ACCTTCGTGTATTTAGTCATGGGGTGGCTGATGATTATTGCAG 436
||||| ||..|.||.|||.|.||.|||||.|||.||..|||.|||||..
BL03308___ypl 387 TGTCAGCACACTGGTATATCTTGTGATGGGCTGGATGGCGATCATTGCGA 436
BSNT_03249___ 437 TTAAAC--CTTTATATGTTTCACTGAGCGGAGCGGGATTCAGCCTCCTTT 484
|.||.| |||||||.| .|..|||.|||||..||.|||..|||.||..
BL03308___ypl 437 TCAAGCCGCTTTATACG--GCCTTGACCGGAGAAGGGTTCGCCCTGCTGC 484
BSNT_03249___ 485 TTCTCGGCGGCATTTTATACTCTGTCGGGACCATCTTTTACATTTGGAAA 534
||.|.||.||.||.||.||.||||||||.|||||||||||..|.||||.|
BL03308___ypl 485 TTTTAGGGGGAATCTTGTATTCTGTCGGAACCATCTTTTATTTATGGAGA 534
BSNT_03249___ 535 AAGATCCCCTTCCATCACGCCATTTGGCACAGCTTT-GTATTGGGCGGGA 583
|||||.||.|..|||||.||.||.||||||| |||| ||..|.|||||.|
BL03308___ypl 535 AAGATTCCATATCATCATGCGATATGGCACA-CTTTCGTGCTCGGCGGCA 583
BSNT_03249___ 584 GCGCCGCCATGTTTTTCTGCGTGCTCTTCTATTGT-GTAAAAGTGCCGTT 632
|||||.|.|||||||||||||||||.||||| .|| |.||||||||||||
BL03308___ypl 584 GCGCCTCAATGTTTTTCTGCGTGCTTTTCTA-CGTGGCAAAAGTGCCGTT 632
BSNT_03249___ 633 CCTTTCGTAA 642
..|.||||||
BL03308___ypl 633 TGTATCGTAA 642
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