Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03248 and BL03309
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03248___yplP.1.5803.seq
# -bsequence dna-align/BL03309___yplP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03248___yplP-BL03309___yplP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03248___yplP-BL03309___yplP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03248___yplP
# 2: BL03309___yplP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1125
# Identity: 647/1125 (57.5%)
# Similarity: 647/1125 (57.5%)
# Gaps: 252/1125 (22.4%)
# Score: 1530.5
#
#
#=======================================
BSNT_03248___ 1 ATGAATAGTGCACCAAAAC---------TCAATACATTTCAAC-ATCTAA 40
||||.|| ||.|| ||..||..||||..| |.||.|
BL03309___ypl 1 ATGATTA-------AACACACATATCCGTCCGTAGGTTTCTCCGAGCTGA 43
BSNT_03248___ 41 TCGGAGAA----CATCAAACTTTTCTGGAAGCGA-------AGCGA-ATC 78
||||.||| ..|| ||||| ||.||.||| ||||| |
BL03309___ypl 44 TCGGGGAATGCGATTC---CTTTT-TGCAAACGAAAAACAGAGCGATA-- 87
BSNT_03248___ 79 GCCAA---GCAG----TTCTCGTTATCGGA----GCTTCCTGTCTTAATA 117
||| |||| |||.| |||.|| |.|||.||
BL03309___ypl 88 --CAATTTGCAGCATCTTCCC---ATCCGATTCTGATTCATG-------- 124
BSNT_03248___ 118 ACAGGAAAAATCGGAACAGGCAAAAATCACTTCGCACATGCCATACACTT 167
.|||||.| ||.|||||||||.|.|..|||||..|.|||||.|| ||
BL03309___ypl 125 --GGGAAACA--GGCACAGGCAAAGAGCTGTTCGCCAAAGCCATTCA-TT 169
BSNT_03248___ 168 --GGA--ATC-TTCGAGAAGCAATGAACCGTT------TATGAGCGTCAA 206
||| ||| |||.|| .||||.||.|| |.|.|||
BL03309___ypl 170 CCGGATCATCTTTCAAG----GATGATCCCTTCACACATGTAAGC----- 210
BSNT_03248___ 207 TTGCAGCACCCATTCGGAAGAAACCCTTTTTCATGAGCTTTTTGGCCCTA 256
||||||||.| .|||.||| .|||| |
BL03309___ypl 211 -TGCAGCACGC---TGGATGAA---------GATGA-------------A 234
BSNT_03248___ 257 ACGGAAACAC---AGGTGTTTTTC--AAAAAGCGGTACGA----GGAACC 297
|||| | ||.|.|||||| ..|.|||.|.|.|| ||||||
BL03309___ypl 235 ACGG-----CTGAAGATTTTTTTCTTTCAGAGCTGAATGAGCCCGGAACC 279
BSNT_03248___ 298 CTTTTTCTTGATGATGTATGGCG--CATGCCTGCTTCT---GTACAAGCT 342
.|.|||||.||.||.||.|||.| .||.|.|||.||| |..||.|||
BL03309___ypl 280 TTGTTTCTCGACGAAGTGTGGGGTCTATCCTTGCATCTCCAGGGCAGGCT 329
BSNT_03248___ 343 -----CAGCTGTT--AAAAGCGCTTGATTCAGACACGGAGAAACCGCGAA 385
||||..|| ||||| .|||.|| |.||| ||.
BL03309___ypl 330 TTTGGCAGCCATTGAAAAAG----GGATGCA-------AAAAA----GAT 364
BSNT_03248___ 386 TGATCTGTGCTTC-TGCAGACCGATC-CGTGGAAC------ATA------ 421
|||||....|||| .|||..|| || |.|.|||| |||
BL03309___ypl 365 TGATCACCTCTTCAAGCATGCC--TCTCATTGAACGGATTGATAGCAGCG 412
BSNT_03248___ 422 CATTCAGGCAA-GACTTATTCTACAGACTGAACATTTTAACGCTC----- 465
.|||| .|||| |||.|.|.||||||.||.||..| ||||
BL03309___ypl 413 AATTC-CGCAAGGACCTGTACTACAGGCTCAATGT------GCTCGACCT 455
BSNT_03248___ 466 -ACACTGCCCGAATTATC----GGAACGAAAAAGCGATATTCCGCTTTTG 510
.|.||.||| |.|| .|||||...||||||.||.||.|||.|.
BL03309___ypl 456 TCCGCTTCCC----TCTCTTAGTGAACGGCGAAGCGACATCCCCCTTCTC 501
BSNT_03248___ 511 ACACAGCATTTTCTCTCAAATTCCGG---TCAGCAATTCTTAATCGATCC 557
...||.|||||| |.|||...||| |||..|..|.|...||||.||
BL03309___ypl 502 GTGCATCATTTT---TTAAAAAGCGGGGATCATGACATATATGTCGAACC 548
BSNT_03248___ 558 CTCCGTTTTTCCCG---TGCTT--GAGAAGCATGCATTTGAAGGCAATGT 602
...||||| | .|||| |||.||||||..|||||.||.||.||
BL03309___ypl 549 GGTCGTTT-----GGAAAGCTTTAGAGCAGCATGAGTTTGAGGGGAACGT 593
BSNT_03248___ 603 CAGGGAATTAAAAAACGCTG-CAGATTATATGGCGGCAGTATCAAGCGGG 651
|||.|||.|.|||||| .|| |.|||||||||....|.||.|||..|||.
BL03309___ypl 594 CAGAGAACTCAAAAAC-ATGACGGATTATATGATAACCGTCTCAGACGGA 642
BSNT_03248___ 652 GGAACGATTCAGCCATATGACCTGCCGCCGTATATTAGAGGCGCGATAGA 701
..|||||||||||..||.|||...|||||.|...|.|||| .|.|.|
BL03309___ypl 643 AAAACGATTCAGCTTTACGACACACCGCCCTCGTTAAGAG----AACAAA 688
BSNT_03248___ 702 -CAGAAAA---ACGTCGAAG---AAAAAAGCGAAGCT--------GCTGA 736
||.|||| |.|.|.||| ||||||.|| ||| .||.|
BL03309___ypl 689 TCAAAAAAAAGAAGCCTAAGGACAAAAAAACG--GCTTCGGCATCACTTA 736
BSNT_03248___ 737 CTTTAATGGAAAAAGCTGAGTTTTTGTTTATTTTGGAAACAATAAAAGTA 786
|.|||||||||||||..||||||..||||.|..|.||..||||.||...|
BL03309___ypl 737 CCTTAATGGAAAAAGAGGAGTTTGCGTTTTTGCTCGATGCAATCAAGCAA 786
BSNT_03248___ 787 TTGAACGAAAAAGGAGAACCTGCCAGCAG-ACGGATCATTTCTGAACACA 835
||.||.|||||||||||.|||||||||.| |.||.|| |.||.||.|..|
BL03309___ypl 787 TTAAATGAAAAAGGAGAGCCTGCCAGCCGCAGGGTTC-TGTCCGAGCTGA 835
BSNT_03248___ 836 GCAAAAATACC--CAAACCTCG----TTAACTCCTCAGCAGGTCAGAAGC 879
||||| |.| ||| .||| || ||.||.|||||.||.||||||
BL03309___ypl 836 GCAAA---AGCGGCAA--GTCGGAGCTT-ACACCCCAGCAAGTGAGAAGC 879
BSNT_03248___ 880 CGTCTCGACTATTTGGAGAAAAAAGATTATGTCACCAAAAGCCGCGGACG 929
.|..|.||.||||||||.||||.|||.|.|.|.||.||..||||||||.|
BL03309___ypl 880 AGATTGGATTATTTGGAAAAAAGAGAGTTTATTACAAAGGGCCGCGGAAG 929
BSNT_03248___ 930 CGCAGGCACAAAAATTACCTTTGAGGGCTTGAGCTTTATAGAG-ACGTTA 978
.||.||.||||||||.||..||||.|||.|..|||||.|| || .|.|||
BL03309___ypl 930 AGCCGGGACAAAAATCACGCTTGAAGGCCTCCGCTTTTTA-AGCTCTTTA 978
BSNT_03248___ 979 AAAAATCAAAT-------GATCTAG 996
||..||||.|| ||| |||
BL03309___ypl 979 AAGCATCACATTATTCAAGAT-TAG 1002
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