Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01907 and BL03320

See Amino acid alignment / Visit BSNT_01907 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01907___appC.1.5803.seq
#    -bsequence dna-align/BL03320___appC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01907___appC-BL03320___appC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01907___appC-BL03320___appC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01907___appC
# 2: BL03320___appC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     672/933 (72.0%)
# Similarity:   672/933 (72.0%)
# Gaps:          39/933 ( 4.2%)
# Score: 2262.5
# 
#
#=======================================

BSNT_01907___      1 ATGTCAGAGCTGCAAA-----CAACTCCCTCGCCGGAGATCAGGCTGAAA     45
                     |||.||.||  .||||     |.||.||.|||||||||||||...||.|.
BL03320___app      1 ATGACACAG--ACAAATCCATCGACACCTTCGCCGGAGATCACATTGCAG     48

BSNT_01907___     46 GAAAATATTTCGAA--AAAGCCAGAAACAATGACAAAGATTTTCTGGGGA     93
                     ||||  ||.|||.|  ||||||.||.|||||||||||.||.||.|..|.|
BL03320___app     49 GAAA--ATGTCGCACCAAAGCCCGAGACAATGACAAAAATCTTTTTTGAA     96

BSNT_01907___     94 AAATTCTCGAAAAACAAACTGGCCATTTTAGGTGCCGTTATTCTT-TTTA    142
                     ||.||.|..||||||||.|||||..|..|.||.|..||| ||.|| ||||
BL03320___app     97 AAGTTTTATAAAAACAAGCTGGCGGTAATTGGAGGAGTT-TTATTATTTA    145

BSNT_01907___    143 TCATTATTATGTCGGCTGTTTTCGCTCCTTTAATTGCACCTTATCCCCAA    192
                     |.|||||..|.||.||..||||.|||||..|.||.||.||.||.||.|..
BL03320___app    146 TTATTATCCTATCAGCGATTTTTGCTCCGGTGATCGCTCCATACCCGCCG    195

BSNT_01907___    193 GAGCAGCAAAGCCTGCTTGATAA-ATATAAGGCGCC----GGGCCTTGAA    237
                     ||.|||||||.|||.||..|||| .|| ||..||||    ||    ||||
BL03320___app    196 GAACAGCAAAACCTTCTGAATAAGCTA-AAACCGCCAAGTGG----TGAA    240

BSNT_01907___    238 CATCTGATGGGAACGGATAAATTTGGACGTGATATTTTCAGCCGGATCCT    287
                     |||||.||||||||.||.||.|||||.||.||||||||||||||..|.||
BL03320___app    241 CATCTAATGGGAACAGACAAGTTTGGCCGAGATATTTTCAGCCGTTTACT    290

BSNT_01907___    288 ATATGGAGCGCGTGTCTCTTTATTGGTTGGATTTGCGTCCGTAGTCGGCT    337
                     .|||||.||.||.||.||||||.|.||.||.|||||.||.|||.|.||.|
BL03320___app    291 TTATGGGGCTCGGGTTTCTTTACTTGTAGGCTTTGCCTCTGTACTTGGAT    340

BSNT_01907___    338 CGATTTTGATCGGAACGGTTTTAGGAGCATTAGCCGGATATTTCAGAGGA    387
                     |||||..|||.||.|||||..|.||.|||.|.|||||.||.||..|.|||
BL03320___app    341 CGATTACGATAGGTACGGTGGTCGGCGCAATCGCCGGCTACTTTGGCGGA    390

BSNT_01907___    388 ATAGTGGATGCTGTCATTATGCGTGTAGTTGACATTGTGTTATCCATTCC    437
                     |||.|.||.|||.|.||.|||.|..|.||.||.|||||.||||||||.||
BL03320___app    391 ATAATCGACGCTATTATGATGAGACTGGTGGATATTGTATTATCCATACC    440

BSNT_01907___    438 TGATAT-TTTCTTGTTGATCACGCTGGTCACCATCTTCAAGCCGGGTGTG    486
                     .||.|| |||| ||||.|||||||||||||||||||||.|||||||..|.
BL03320___app    441 CGACATCTTTC-TGTTAATCACGCTGGTCACCATCTTCCAGCCGGGCATA    489

BSNT_01907___    487 GACAAACTGATTTTAATTTTCTGTC-TCACAGGATGGACCACAACAGCAC    535
                     ||.||||||||||||||.||| |.| |.||..|||||||.||.|||||.|
BL03320___app    490 GATAAACTGATTTTAATATTC-GCCTTGACGAGATGGACGACGACAGCGC    538

BSNT_01907___    536 GATTAGTAAGGGGAGAATTCTTGTCGCTCCGTTCAAGGGAATATGTTC--    583
                     |..|.||..||.|.||.||.|||||..|..|.||.|||||    ||||  
BL03320___app    539 GCCTTGTCCGGAGCGAGTTTTTGTCCTTGAGGTCGAGGGA----GTTCGT    584

BSNT_01907___    584 --TTGCTGCTAAAACAATTGGAACAAAAACGCACAAAATTATTTTTTCTC    631
                       |.||.||.|||||.||.||.||||.||...|||||||.||||||||||
BL03320___app    585 CTTGGCGGCGAAAACGATCGGTACAAGAAATTACAAAATCATTTTTTCTC    634

BSNT_01907___    632 ATATCCTGCCCAATGCGTTAGGGCCGATTATCGTGTCAGCTACGCTGAAA    681
                     |||||||.||.||||||.|.||||||||||||||..|.||.|||||....
BL03320___app    635 ATATCCTTCCGAATGCGATGGGGCCGATTATCGTTGCCGCGACGCTTTCC    684

BSNT_01907___    682 GTAGGGTCTGTTATTCTAGCTGAATCGGCGCTAAGCTA-CTTGGGCTTTG    730
                     ||.||..|.||.||.||.||.||||||||..||||||| ||| ||.||.|
BL03320___app    685 GTCGGTACCGTAATCCTTGCGGAATCGGCATTAAGCTATCTT-GGATTCG    733

BSNT_01907___    731 GAATCCAGCCGCCAATCGCTAGCTGGGGGAACATGCTTCAAGACGCACAG    780
                     |..|.||||||||.||.||.||||||||.|||||||||||.||.||||||
BL03320___app    734 GGGTTCAGCCGCCGATGGCAAGCTGGGGAAACATGCTTCAGGATGCACAG    783

BSNT_01907___    781 AATTTCACAGTAATGATTCAAGCATGGTGGTACCCGTTATTTCCCGGG-C    829
                     ||.||.||..|.|||||.||.||.||||||||.|||.| .|||||||| |
BL03320___app    784 AACTTTACGATCATGATCCAGGCGTGGTGGTATCCGCT-GTTCCCGGGCC    832

BSNT_01907___    830 TATTTATTTTAATGACCGTTTTATGCTTCAACTTTGTCGGTGATGGCCTG    879
                     |..|.||..|..|.||.||..|.|||||.|||||..|.||.||.||.||.
BL03320___app    833 TGATGATCCTGCTCACTGTGCTGTGCTTTAACTTCTTAGGCGACGGACTC    882

BSNT_01907___    880 CGGGATGCGCTTGATCCGAAAAATATTAAATAA    912
                     ||.|||||||||||||||||.||||||||||.|
BL03320___app    883 CGCGATGCGCTTGATCCGAAGAATATTAAATGA    915


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