Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01914 and BL03323

See Amino acid alignment / Visit BSNT_01914 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01914___oppA.1.5803.seq
#    -bsequence dna-align/BL03323___oppA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01914___oppA-BL03323___oppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01914___oppA-BL03323___oppA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01914___oppA
# 2: BL03323___oppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1693
# Identity:    1194/1693 (70.5%)
# Similarity:  1194/1693 (70.5%)
# Gaps:         122/1693 ( 7.2%)
# Score: 3973.5
# 
#
#=======================================

BSNT_01914___      1 ATGAAAAAACGTTGGTCGATTGTCACGTTGATGCTCATTTTCACTCTCGT     50
                     .||||.||.||||.|||..||.|||..||.||||||||||||||.|||||
BL03323___opp      1 TTGAAGAAGCGTTTGTCATTTATCAGTTTAATGCTCATTTTCACACTCGT     50

BSNT_01914___     51 GCTGAGCGCGTGCGGCTTTGGCGGCAGCGGATCAA---ACGGTGA---GG     94
                     .||.|||||.||||||||         |||.||||   .||||||   .|
BL03323___opp     51 CCTCAGCGCCTGCGGCTT---------CGGCTCAAGCTCCGGTGACGGCG     91

BSNT_01914___     95 GGAAAAAGGACAGTAAA-GGAAAGACGACACTTAACATTAATATTAAAAC    143
                     |.|||||.|||||.||| |||||||| |||.|.||..|.||.||||||||
BL03323___opp     92 GTAAAAAAGACAGCAAAGGGAAAGAC-ACATTAAATGTCAACATTAAAAC    140

BSNT_01914___    144 TGAGCCGTTTTCCTTACATCCGGGATTGGCAAATGATTCAGTATCAGGCG    193
                     .||.||||||||..|||||||||||.|.|||||.||||          ||
BL03323___opp    141 AGAACCGTTTTCACTACATCCGGGACTCGCAAACGATT----------CG    180

BSNT_01914___    194 GTGTC----------ATCCGTCAGACTTTTGAAGGATTGAC-ACGTATCA    232
                     |||||          .|.||||||||||||||||||||||| || .|||.
BL03323___opp    181 GTGTCTGCAAACGTGCTTCGTCAGACTTTTGAAGGATTGACGAC-AATCG    229

BSNT_01914___    233 ATGCAGATGGTGAGCC---TGAAGAAGGCATGGCTTCTAAAATTGAAACG    279
                     .|..||||||..||||   ||||| .||||  ||....|||||.|||...
BL03323___opp    230 GTAAAGATGGAAAGCCGGTTGAAG-CGGCA--GCCGAAAAAATCGAAGTC    276

BSNT_01914___    280 AGCAAGGACGGAAAGACATATACATTTACCATTCGTGATGGTGTGAAATG    329
                     |||.|.|||..|||.|||||.|||||.||..|.||.||   .|.||||||
BL03323___opp    277 AGCGACGACCAAAAAACATACACATTCACGCTCCGCGA---CGCGAAATG    323

BSNT_01914___    330 GTCTAATGGGGACCCTGTAACAGCACAAGATTTTGAATATGCTTGGAAAT    379
                     |||.|||||.||.||||||||||||.|.|||||||||||.||.|||||||
BL03323___opp    324 GTCAAATGGAGATCCTGTAACAGCAGAGGATTTTGAATACGCATGGAAAT    373

BSNT_01914___    380 GGGCGCTTGATCCTAATAACGAATCGCAATACGCTTACCAGCTCTACTAC    429
                     |||||||.||.|||||.||||||||||||||.||.||.|||||.||||||
BL03323___opp    374 GGGCGCTCGACCCTAAAAACGAATCGCAATATGCGTATCAGCTTTACTAC    423

BSNT_01914___    430 ATAAAAGGTGCTGAAGCGGCGAATACCGGCAAAGGCAGCCTAGACGATGT    479
                     .|||||||.|..|||||.|||||.|||||||||||.|...|.||.|||||
BL03323___opp    424 TTAAAAGGCGGAGAAGCAGCGAACACCGGCAAAGGGAAAATTGAAGATGT    473

BSNT_01914___    480 -GGCAGTAAAAGCTGTGAATGACAAAACGCTGAAGGTTGA-ATTAAATAA    527
                      ||| ||.||||||||.|||||.||.||..|.||.||.|| .||.|| ||
BL03323___opp    474 CGGC-GTTAAAGCTGTTAATGATAAGACTTTAAAAGTCGAGCTTGAA-AA    521

BSNT_01914___    528 CCCGACTCCATATTTCACTGAATTAACTGCGTTCTATACGTATATGCCGA    577
                     .|||||.||.|||||.||||||.|.||.||.|||||.||.||||||||..
BL03323___opp    522 ACCGACACCGTATTTTACTGAACTGACAGCATTCTACACATATATGCCAG    571

BSNT_01914___    578 TCAATAAGAAAATTGCAGAGAAAAATAAAAAGTGGAATACAAATGCCGGA    627
                     |||||||.||..|.||||||||.|||...||.|||.|.|||||   ||.|
BL03323___opp    572 TCAATAAAAAGGTAGCAGAGAAGAATGCGAAATGGTACACAAA---CGCA    618

BSNT_01914___    628 GATG---ATTATGTATCAAACGGGCCGTTCAAAATGACGGCATGGAAACA    674
                     ||||   |.||.|||||.|||||.||.|||||||||.||..||||||.||
BL03323___opp    619 GATGAGAACTACGTATCTAACGGACCTTTCAAAATGGCGAAATGGAAGCA    668

BSNT_01914___    675 CAGCGGCTCTAT--TACTCTCGAAAAAAATGACCAGTATTGGGATAAAGA    722
                     ||||||....||  ||  ||.||.|||||.||||||||.|||||||||||
BL03323___opp    669 CAGCGGAAACATCGTA--CTGGAGAAAAACGACCAGTACTGGGATAAAGA    716

BSNT_01914___    723 CAAAGTCAAACTGAAGAAAATCGATATGGTTATGATCAACAAT---AACA    769
                     |...||.||.||||||||||||.||||||..|||.|||||.||   ||||
BL03323___opp    717 CGCTGTTAAGCTGAAGAAAATCAATATGGCGATGGTCAACGATCCGAACA    766

BSNT_01914___    770 AT--ACGGAAC---TA-AAAAAATTCCAAGCTGGCGAACTTGA--TTG--    809
                     .|  .|.||||   || ||||||         |||||.||.||  |||  
BL03323___opp    767 CTGGTCTGAACATGTACAAAAAA---------GGCGAGCTAGACTTTGTA    807

BSNT_01914___    810 GGCCGGTATGCCGCTCGGACAGCTTCCGACAGAATCCCTGCCGACCCTGA    859
                     ||.|    .||||||.|..|||.||.|.||.||..|..|.||.|.|||||
BL03323___opp    808 GGAC----AGCCGCTTGACCAGATTTCAACGGATGCGATTCCAAGCCTGA    853

BSNT_01914___    860 AAAAAGACGGTTCTTTACATGTTGAGCCGATTGCAGGAGTGTATTGGTAC    909
                     |||||||.|| .||..|||  ||||.|||.|.|||...||.||...||||
BL03323___opp    854 AAAAAGAAGG-CCTGAACA--TTGATCCGTTCGCATCGGTTTACCTGTAC    900

BSNT_01914___    910 AAATTCAACACTGAAGCTAAGCCATTAGACAACGTCAATATCCGTAAAGC    959
                     |||||||||||||||||....||..|..||||.|||||.||||||||.||
BL03323___opp    901 AAATTCAACACTGAAGCGGCTCCGCTGAACAATGTCAACATCCGTAAGGC    950

BSNT_01914___    960 TTTAACATATTCGCTTGACCGTCAGTCGATTGTTAAAAACGTTACGCAAG   1009
                     ..|.|||||..||.|..||||..|..||||.||.||||||.|.|||||||
BL03323___opp    951 GCTGACATACGCGATCAACCGCGAAGCGATCGTCAAAAACATCACGCAAG   1000

BSNT_01914___   1010 GAGAGCAAATCCCGGCAATGGCTGCAGTGCCGCCTACAATGAAGGGATTT   1059
                     ..||.||..|.||.||.||||....|||||||||..|..|..|.||.|||
BL03323___opp   1001 CGGAACAGCTGCCTGCGATGGGATTAGTGCCGCCGGCGGTCCACGGCTTT   1050

BSNT_01914___   1060 GAGGAT--AACAAGGAAGGATACTTCAAAGACAATGATGTCAAAACAGCA   1107
                     ||  ||  ||||   ||||.||.|||||||||.||||||||.|.|..||.
BL03323___opp   1051 GA--ATCCAACA---AAGGCTATTTCAAAGACCATGATGTCGATAAGGCG   1095

BSNT_01914___   1108 AAAGAATACCTTGATAAAGGCCTAAAAGAAATGGGCTTAAGCAAGGCATC   1157
                     ||||||.||.|.||.||||||.|.|||||..|.||.||.|..||.||.||
BL03323___opp   1096 AAAGAACACTTGGAAAAAGGCTTGAAAGAGCTCGGTTTGAAAAAAGCGTC   1145

BSNT_01914___   1158 TGATTTGCCAAAAATCAAATTGTCTTACAACACTGATGACGCACACGCGA   1207
                     .||..|.||.|||||||...|.||.||||||||.|||||.||.|||...|
BL03323___opp   1146 AGACCTTCCGAAAATCACGCTTTCCTACAACACGGATGAAGCGCACCAAA   1195

BSNT_01914___   1208 AAATCGCTCAAGCAGTACAAGAAATGTGGAAGAAAAATTTAGGCGTTGAT   1257
                     |||||||||||||.||.||.|||||||||||.||..|..|.|||||.|||
BL03323___opp   1196 AAATCGCTCAAGCCGTTCAGGAAATGTGGAACAAGGAACTGGGCGTAGAT   1245

BSNT_01914___   1258 GTTGAGCTTGATAACTCAGAGTGGAATGTCTATATTGATAAGCTTCACAG   1307
                     ||.||..|.|..||...|||.|||||.||.||.||.||||||||.|| .|
BL03323___opp   1246 GTGGAATTAGGCAATGAAGAATGGAACGTTTACATCGATAAGCTCCA-TG   1294

BSNT_01914___   1308 CC--AAGATTATCAAATCGGCCGTATGGGCTGGCTCGGCGACTTCAATGA   1355
                     ||  || |.|||||||||||||||.|.||||||..||.||||||.||.||
BL03323___opp   1295 CCGGAA-ACTATCAAATCGGCCGTTTAGGCTGGACCGCCGACTTTAACGA   1343

BSNT_01914___   1356 TCCTATCAACTTCCTTGAATTGTTCCGTGACAAAAACGGAGGAAATAACG   1405
                     ....||.||||||||||||...|.|||.||||||.|.||.|||||.||.|
BL03323___opp   1344 CGGGATGAACTTCCTTGAAACATACCGCGACAAAGAAGGCGGAAACAATG   1393

BSNT_01914___   1406 ATACAGGCTGGGAAAATCC--AGAATTCAAAAAGCTTCTGAATCAGTCAC   1453
                     ||||...|||||||||..|  ||.||  |||.||||.||||||.|..||.
BL03323___opp   1394 ATACGAACTGGGAAAACGCGAAGTAT--AAAGAGCTGCTGAATAAAGCAT   1441

BSNT_01914___   1454 AAACTGAAACAGATAAAACAAAACATGCA--GAGCTGCTGAAAAAAGCAG   1501
                     .||..|||||.|||..|.|.||||  |||  ||||||.|||||.||||.|
BL03323___opp   1442 CAAGAGAAACTGATTCAGCGAAAC--GCATCGAGCTGATGAAAGAAGCGG   1489

BSNT_01914___   1502 AAGGTATTTTCATTGATGAAATGCCGGTTGCCCCAATCTATTTC--CATA   1549
                     ||.|.||..||||.|||||..|||||||.||.||.|||||.|||  ||.|
BL03323___opp   1490 AAAGCATCATCATGGATGAGCTGCCGGTCGCACCGATCTACTTCTACACA   1539

BSNT_01914___   1550 CTG----ATACTTGGGTACAGGATGAAAACCTAAAAGGTGTTATCATGCC   1595
                     .||    || |||     ||.|||||||.|.||||||...||.|..||.|
BL03323___opp   1540 ATGCCGTAT-CTT-----CATGATGAAAGCTTAAAAGACTTTGTTCTGAC   1583

BSNT_01914___   1596 AGGTACTGGTGAGGTTTATTTCAGAAACGCATATTTTAAATAA   1638
                     .|||||.||||||.|.|||||||.||.|||..|||||.|||||
BL03323___opp   1584 CGGTACAGGTGAGATCTATTTCAAAACCGCGCATTTTGAATAA   1626


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