Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05394 and BL03361

See Amino acid alignment / Visit BSNT_05394 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence dna-align/BSNT_05394___degU.1.5803.seq
#    -bsequence dna-align/BL03361___degU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05394___degU-BL03361___degU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05394___degU-BL03361___degU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05394___degU
# 2: BL03361___degU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity:     577/690 (83.6%)
# Similarity:   577/690 (83.6%)
# Gaps:           0/690 ( 0.0%)
# Score: 2433.0
# 
#
#=======================================

BSNT_05394___      1 GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGA     50
                     ||||||||||||||.|||||.|||||.|||||.|||||||||||.|||||
BL03361___deg      1 GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGA     50

BSNT_05394___     51 AGGTGTTAAACGGATATTGGATTTTGAACCTACCTTTGAAGTGGTAGCCG    100
                     ||||||.||||||||.||||||||.||||||||||||||.||.||.||||
BL03361___deg     51 AGGTGTCAAACGGATTTTGGATTTCGAACCTACCTTTGAGGTAGTGGCCG    100

BSNT_05394___    101 AAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCT    150
                     ||||.||.|||||.||.|||||||||||.|||||.||||||||.||||||
BL03361___deg    101 AAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCT    150

BSNT_05394___    151 GATGTTGTGATCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGC    200
                     ||||||||.|||||||||||.||||||||.||.||.||.||.||.|||||
BL03361___deg    151 GATGTTGTTATCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGC    200

BSNT_05394___    201 TACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTAATTATTCTAT    250
                     .||||||||.||.||.||..|||||||.|||||.||.||.||||||.|||
BL03361___deg    201 GACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTTATTATTTTAT    250

BSNT_05394___    251 CAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCA    300
                     |.||.||.|||||||||||.|||||.||||||||..|.||||||||.||.
BL03361___deg    251 CCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCC    300

BSNT_05394___    301 AGAGGTTATCTGCTGAAAGAGATGGATGCTGATACATTAATTGAAGCGGT    350
                     .|.||.||||||||||||||.||||||||.|||||..|.||.|||||.||
BL03361___deg    301 CGGGGCTATCTGCTGAAAGAAATGGATGCCGATACGCTGATCGAAGCCGT    350

BSNT_05394___    351 TAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA    400
                     .||||||||.|||||.|||||||||||.||.|||||.||||||||.||||
BL03361___deg    351 GAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA    400

BSNT_05394___    401 ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACAC    450
                     |.||.||.||.|||||||||||.||||||||||||||.||.||..|.|||
BL03361___deg    401 ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCAC    450

BSNT_05394___    451 CCTCAACATGAGGTTTACCCTGAAATCCGCAGACCATTACATATTTTAAC    500
                     .||||.||||||||.||.||.||||||||.|||||..|.||.|||.|.||
BL03361___deg    451 GCTCAGCATGAGGTGTATCCGGAAATCCGGAGACCTCTTCACATTCTCAC    500

BSNT_05394___    501 TAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACC    550
                     .||..|||||||.||.||.|||||||||||.||.||.|||||||||||||
BL03361___deg    501 AAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACC    550

BSNT_05394___    551 GCGGAATTGGTGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCAT    600
                     |||||||.||.||||||||.|||||||||||.|||||.||||||||||||
BL03361___deg    551 GCGGAATCGGCGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCAT    600

BSNT_05394___    601 GTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGACGCAAGCCGT    650
                     ||||||||.||..|.||||||||.||||||||||||.|.|||||.||.||
BL03361___deg    601 GTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAACGCAGGCTGT    650

BSNT_05394___    651 TGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG    690
                     |||.||.|||||||||||.||||||||||||||||||||.
BL03361___deg    651 TGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA    690


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