Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05386 and BL03368
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_05386___yvyG.1.5803.seq
# -bsequence dna-align/BL03368___yvyG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05386___yvyG-BL03368___yvyG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05386___yvyG-BL03368___yvyG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05386___yvyG
# 2: BL03368___yvyG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity: 319/532 (60.0%)
# Similarity: 319/532 (60.0%)
# Gaps: 104/532 (19.5%)
# Score: 891.5
#
#
#=======================================
BSNT_05386___ 1 ATGTCAGCGAA---GGCAATTATTGAACAATTGAAGCGACTT-TGCGTTC 46
|.||| || |.||||||.|..||.|||| ||| |||||.|
BL03368___yvy 1 ------GTGAAACGGG---TGATTGAAGAGCTGGAGCG-CTTATGCGTGC 40
BSNT_05386___ 47 TGCATGAGCACCTGCTCACGCTGTCTGAAGAAAAGACGGAAGCGCTCAAA 96
|||||||.||.|||||..|.|||||.|||.||||.|||||.||||| .||
BL03368___yvy 41 TGCATGAACATCTGCTGTCTCTGTCGGAACAAAAAACGGAGGCGCT-GAA 89
BSNT_05386___ 97 GCCG-GCAAAACAAAAGAGCTTTCTAACATTTTGACAAAAGAGCAAAAAT 145
|.|| .|.|||.|||.|..|||||..|.||..||||.|||||.|||||.|
BL03368___yvy 90 GACGAACGAAATAAAGGCACTTTCAGAAATCGTGACGAAAGAACAAAAGT 139
BSNT_05386___ 146 ATATTCAAGCAATCACGCAGACAGAAGATGACCGGATCAAAACAACT--- 192
||.|.||.||.||....||.||.||..|...|||.||..||.|||||
BL03368___yvy 140 ATGTGCAGGCCATTGAACAAACGGAGCAGTCCCGCATTGAAGCAACTAAA 189
BSNT_05386___ 193 -------TCGGCCTTTCTCGGATATAGCGAAAATAATACTATATCCGCAT 235
||||| ..|||||| .||| ||.||...|||||
BL03368___yvy 190 AGCTGTATCGGC--AGCTCGGA---CGCG--------ACGATCAGCGCAT 226
BSNT_05386___ 236 GTATCGCCAAAACCTCAGGCAGTGAAAAGGAAGAGCTGGAACAAC--TAT 283
|||||..||||.|..|.|||.|.||.||..|.|.|||||||||.| |||
BL03368___yvy 227 GTATCAGCAAAGCTGCGGGCGGCGAGAAAAAGGTGCTGGAACAGCTGTAT 276
BSNT_05386___ 284 ACGAATCTCTTTCTCA-AGTTC-TCGGACGTCTGAAAAAAGTAAATGAGA 331
.|.||.| ||||| ||.|| ||...|||.||||..|.||.||.||..
BL03368___yvy 277 GCCAAGC----TCTCACAGCTCGTCACCCGTTTGAAGGATGTGAACGATT 322
BSNT_05386___ 332 TGAATAGGCAGCTGAC----AAGAGACGCGCTGCAATTCATCTCTATTTC 377
||||.|.||||||||| .|| .||||.|||||.|||||..||.|
BL03368___yvy 323 TGAACAAGCAGCTGACTTTTCAG----TCGCTTCAATTTATCTCGCTTAC 368
BSNT_05386___ 378 GTACGATATGCTGGTTCCTAAGGAAAATAAC--TTC-AATTACAGCAAAT 424
.|..||||||||..||||.||.||| ..| ||| ||||||.|.|||
BL03368___yvy 369 ATTTGATATGCTCCTTCCGAATGAA---GGCGGTTCGAATTACGGAAAA- 414
BSNT_05386___ 425 CAATTAAAGCTGAGCTGCCGAAAAGCAGCCAAA--------------TGA 460
|||| |||||||||| |||
BL03368___yvy 415 -----------GAGC--------AGCAGCCAAACCAGACAGGCGGGGTGA 445
BSNT_05386___ 461 AAC---------TGTTTGATTCAAAAGCTTAG 483
||| |.||.|||||||||||||||
BL03368___yvy 446 AACGGCTTTCTTTATTCGATTCAAAAGCTTAG 477
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